GgaINT0093207 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78601288-78602024:+
Coord C1 exon
chr2:78601288-78601402
Coord A exon
chr2:78601403-78601833
Coord C2 exon
chr2:78601834-78602024
Length
431 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GCAGATCTTTTTTCCAACAGGTC
3' ss Score
8.57
Exon sequences
Seq C1 exon
TTGCAACTCGAGGTAGCATCTTATACTTCCTTATTACTGAGATGAGCATGGTCAATGTGATGTATCAGACTTCGCTTCGGCAGTTTTTGGGGCTTTTTGACAGCTCCCTAGCCAG
Seq A exon
GTAATTTTGCTAACAAGTATTATTCATACTTATCCGCTCACAGAGGTGGCTGTAGTACAGTGAAGACTTGTTGTAATCTAATACCAGGAAGAATAGTGTTGCCAGTTCCTTGACAGGAATTGCCAGTTTAAAAGCTGTAGACCTTTGTTAGTTACCAATACAACAAATCTTCAGATAATCTTACAGTCCTTAAAGATTAGCTATTAAATTATTAAGAAACGTTATACTATCTAGATTTTCAGTTATGTAGAATGACTTCAAAGGAACTGATATATATAAATATTTTTTTGCTCCTTCAGTCTGAAAGTTGTTGCTAACTTGCTGTCTGATATTTCAGAATTTTGAGCTATGCCTTTTTCTCTTCTACATAGCGTTCTCTTTAATAAGGTCTATCCAAATTGATGTTCAACTGCAGATCTTTTTTCCAACAG
Seq C2 exon
GTCTACCAAAAGCCCTATAACTAGCAAGAGGATTACTAATATTATCGAACATATGACATATGAAGTGTTCAAATATGCAGCCCGAGGACTCTATGAGGAGCACAAATTTCTTTTCACATTATTACTTACTTTGAAGATCGATATACAAAGAAACAGAGTGAAGCATGAAGAATTTCTGACACTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTCGAGGTAGCATCTT
R:
GTGTCAGAAATTCTTCATGCTTCACT
Band lengths:
296-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]