MmuINT0051185 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30940008-30941128:+
Coord C1 exon
chr17:30940008-30940260
Coord A exon
chr17:30940261-30940937
Coord C2 exon
chr17:30940938-30941128
Length
677 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
ATTTTAAAACTGGATTGCAGGTC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTTCCCTGGTGGACGACGAGTCTCTCATCGGCGTCCTGCGCATCACCAAACAGACAGCTGCGGAAGTGAGCGAAAAGCTCCACGTGGCTGCGGAAACGGAGATCAAGATCAATACAGCTCAGGAGGAGTTCCGGCCAGCGGCCACGCGAGGCAGCATCCTTTACTTCCTCATCACAGAGATGAGCATGGTCAACATCATGTACCAAACCTCCCTGGCCCAGTTCTTGAAGTTATTTGACCAGTCCATGGCCAG
Seq A exon
GCAAGTCCTCCCCATCTTCCCCTCAGTCGTTTCCAAAATGGTGACCTATAGGTTTTTATGAAGCTGGGGGCAGGGGATGGATGTGTGTGTGTGTGCTCGCGCACACGTGCGTGCGAGCACATGGCTCAGTCTAGATAGTCTCTGCCGTGAAAGCACGAAGACCTGCGTTCAGAGTCTCGGCACCCACGCCCAAGGCCTGGGTGTAGCAGCGTACACCTGTAAACCCATTATTGCCTGGAAGTAGAAACAGATGCATCAGTGGTGCTCCCTATTGGTCAGCCAGTGTAGCCAATCAGAGAGCTCCAACTCCAGTGAGAGACTCTGATTCAAAAAGTAAGGTGGGAGCTAGAGAGGTTGACTCCATGATTAAAAAAAACAAACCAAAACAAAAACAAAAACAAAAACAACAACAACAGCAACAACAACAGCACACACACACACACACACACACACACACAGAGTTAACCAGGACTGGAGTTTGGTTCCCAGCACTCATGTCCGGTGGCTTGCAACGAACTGCTTATATAACTCCAGCTTTAGATGACATGGCGCCCTCTTCTGGCCTCCATGGGCAACGGCCTGAGGCACATGTTTGTGTGCGTGCTGCTCGCAGGAGTGTGTGCTGCTTGCATGGGCGCAAGTTTTTAAATCTCTTTGATTTTAAAACTGGATTGCAG
Seq C2 exon
GTCTGAAAAGTCTCCGCTACCTCAAAAAAGAATTACAAACATTATTGAGTACCTGACATACGAGGTCTTCACCTATTCTGTGAGAGGCCTGTACGAAAACCACAAATTCCTCTTCGTTCTCCTCATGACACTGAAGATCGATCTCCAGAGAGGGACAGTGAAGCACAAAGAGTTTCAGGCTCTGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:78
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.0=27.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTCTCTCATCGGCGTC
R:
TGTGGTTTTCGTACAGGCCTC
Band lengths:
343-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: