GgaINT0087357 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30631932-30632477:-
Coord C1 exon
chr3:30632225-30632477
Coord A exon
chr3:30632123-30632224
Coord C2 exon
chr3:30631932-30632122
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTTTTGTTTTCATGATTCAGATC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GCTCACTGGTAGATGATGAATCCCTGATTGGAGTTCTGCAAACAACTAAACAAACAGCTGCCGAAGTAACTAAAAAGTTGTCCGTAGCAGCAGAAACTGAAGTGAAGATTAACTCTGCTCAGGAGGATTATCGACCTGCTGCTACGCGTGGGAGCATTCTTTACTTTCTTATTACAGAAATGAGCATGGTCAATAATATGTATCAGACTTCACTGGCTCAGTTCTTAAAGTTATTTGATCAATCCATGGCCAG
Seq A exon
GTAGGAAAACACAGATCTTTCTACCATTCCAGTGTGTGTGTCTTTCCCATGTGTTTGTTGTTATTAAAATGCTTTTCTTGTCCTTTTGTTTTCATGATTCAG
Seq C2 exon
ATCTGAGAAGTCTCCCGTATCCCATAAAAGAATCTCAAATATTATTGAGTACCTTACCTATGAAATTTACACATATTCTGTTAGAGGCTTATATGAAAACCACAAGTTCCTTTTTACCCTTCTCCTGACGTTGAAAATCGATCTTGAGAGAGAACATGTGAAAAACACAGAGTTCCAGACATTCATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.0=27.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTGGGAGCATTCTTTACT
R:
TTTCAACGTCAGGAGAAGGGT
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]