RnoINT0049228 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9482905-9483906:+
Coord C1 exon
chr20:9482905-9483157
Coord A exon
chr20:9483158-9483715
Coord C2 exon
chr20:9483716-9483906
Length
558 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
ATTTTAAAACTGAATTGCAGATC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GTTCCCTGGTGGACGACGAATCTCTCATCGGCGTCCTGCGCATCACCAAACAGACAGCTGCGGAAGTGAGTGAAAAGCTCCACGTGGCGGCGGAAACGGAGATCAAGATCAACACAGCTCAGGAGGAGTTCCGGCCTGCGGCCACGCGAGGCAGCATCCTTTACTTCCTCATCACAGAGATGAGCATGGTCAACATCATGTACCAAACCTCACTGGCCCAGTTCCTGAAGCTGTTTGACCAGTCTATGGCCAG
Seq A exon
GCAAGTCCTCCACACCTGCCCCTCAGCCGTTTCCAAAATGGTAAAAGTTTTATATGGCCTCTGCCACGGAAGCCGGGAGACTTGCATTCAGTGTCTCAGCACCCACACCAAAGGCCTGGGCGTGGCAACATGCATCTGTAAACCCACTGACTGCTTGGAAATAGAAGCAGATGCATCAGTGGTGCTCCCTATTGGTCAGCGGGTGTAGCCAATCGGTGAGCTCCAAGTCCAGTGAGTGAGCCTAACTCAAAAACTAAGGTAGGAGCTAGAGAGGTGAGCTCTGTGGTTAAAGAGCACATACTGTTCTTACTGGGCCCAGCACTCAGGTCGGGTGGCTCGCAACTGATTATAACTCCAGCTTAGGTGATATGACGCCCTCTTCTGGCCTCCATGGGCAACTGCATGCGGCATGTAAGCTGCTTGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACATGCATGCACGCATGCACACGGAGTTTAGTTATTTCTAGTCTTTAGGAATTTAAAAAAAAACTCTTTGATTTTAAAACTGAATTGCAG
Seq C2 exon
ATCCGAAAAGTCTCCGCTCCCTCAAAAAAGAATTACAAATATCATCGAGTACCTGACGTACGAGGTTTTCACCTACTCAGTGAGAGGCCTGTATGAAAACCACAAGTTCCTCTTCGCTCTCCTCATGACACTGAAGATCGATCTCCAGAGGGGGACAGTGAAGCACAAAGAGTTTCAGGCTCTGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:95
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.2=27.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCGGAAGTGAGTGAAA
R:
GTCCCCCTCTGGAGATCGATC
Band lengths:
355-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]