BtaINT0050763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12773599-12774147:+
Coord C1 exon
chr23:12773599-12773851
Coord A exon
chr23:12773852-12773956
Coord C2 exon
chr23:12773957-12774147
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ATTTTTAAAACATATTGCAGGTC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTTCCTTGGTAGACGATGAATCTCTCATTGGTGTCCTCCGCACCACCAAGCTGACAGCCGCTGAAGTCAGTGAAAAACTACACGTAGCTGCAGAAACGGAGGTCAAGATTAACACTGCCCAGGAGGAGTTCCGGCCCGCGGCCACCCGCGGCAGCATCCTCTACTTCCTCATCACGGAGATGAGCATGGTCAACATCATGTACCAGACCTCGCTGGCCCAGTTCTTGAAATTATTTGACCAGTCCATGGCCAG
Seq A exon
GTGGGGCCTCACTACCTAACTACCTCCCCCCCAACAAATTCTGTGTGTATTCCTACTCTCTTAGAAATAGATTTTTACTTCTTTGATTTTTAAAACATATTGCAG
Seq C2 exon
GTCTGAGAAGTCTCCGCTGCCTCAAAAGAGAATTACAAATATTATTGAATATCTGACCTACGAAGTTTTTACATATTCTGTCAGAGGCTTGTACGAGAACCACAAGTTCCTCTTTGTACTCCTCATGACCTTAAAGATCGATCTTCAGAGAGGAACTGTGAAGCACAGAGAGTTTCAGGCTCTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.0=27.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTGGTGTCCTCCGCAC
R:
CTTTTGAGGCAGCGGAGACTT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]