HsaINT1011513 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13735131-13735932:-
Coord C1 exon
chr5:13735818-13735932
Coord A exon
chr5:13735322-13735817
Coord C2 exon
chr5:13735131-13735321
Length
496 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTAAATATTCTATTCACCAGGTC
3' ss Score
7.2
Exon sequences
Seq C1 exon
TGGCTACGCGGGGCAGCATCCTCTACTTCCTCATTACTGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTTCGCCAGTTTCTGGGCTTATTTGACCTTTCCTTAGCCAG
Seq A exon
GTACGTCTGTACGCGGGAAGCCAAGCTGAATTCTATATCTGTGCACTAAAATGATGACATTACATTTATAACTTCCTTCTCCTTTGTTAGTAAGAGTCTTTTTCTTTTTTAAATCTCAGATCAGTGTAATTACCAATGTGTTAACAAATCATTCTGATTTGCCATTTTATGCCCAGAGAAAACTCTACCAACTATTTATCCATTGATTTGATTCCTTTGGCTTCGTATGTTTCTGTTAAACAAGAAAATTCCCAAGATATCGTTGTGAGTGATGATGCCCTGCAGGTAGAATTGATTTAGACAACATTCGGGATTCTGTTATATTATTTCATGTTGAGAGAATTCTTGTTATTTTAGATTTAGGAGGCTTTCTCTTGATGTGTAAAAATAAGAATTCTTCCTCCAAAGTTACTTATTTTCCATTAAAGACAATTGTTTTTACAGACAATTGAAAAGGGCAGTGGGATAAGCCTGATTTAAATATTCTATTCACCAG
Seq C2 exon
GTCTGTCAAGAGCCCGATTACAAGCAAGAGGATTGCTAATATCATCGAGCACATGACCTACGAGGTTTATAAGTATGCTGCCCGAGGGCTGTACGAGGAGCACAAATTCCTGTTCACCTTGTTGCTTACCCTAAAGATTGACATCCAGAGGAACCGAGTCAAGCATGAAGAGTTTCTCACTCTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCATCCTCTACTTCCT
R:
AGTGAGAAACTCTTCATGCTTGACT
Band lengths:
286-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains