BtaINT0050649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84891681-84894108:-
Coord C1 exon
chr2:84893959-84894108
Coord A exon
chr2:84891864-84893958
Coord C2 exon
chr2:84891681-84891863
Length
2095 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TCACCATCTGAATGAACCAGACA
3' ss Score
2.21
Exon sequences
Seq C1 exon
GGGTTAATGGAAGAAAACAAGGTTCAGATTACTGTTTTAAATCCTAAGTCCGTCACCATGGGTCAGCTGTATGGACAGTTTGATTTAGTGTCCCATGAGTGGTCCGACGGGATCCTTGCTGTCAGTTTCAGAGCATTTGCTGCTTCATCG
Seq A exon
GTAAGTGCTAACACTTTGCATGTCTATTTGGAAAGGCTGTGAGAGCTCTGGTTTTTTCAGTTTCAAGTAAACTTTTGTATTTATAGTTCAAGGTACATGTTTAAAGTGCAGTACTGAATAGTCTGGCAGAGTTTCTATGAAGAGCACTTGTGAGTCTCTACAAATAGACGGCCAGAGACCATGGGGGCAGGCATGTCCTCCTCAGTATGCACAGAAGAAAGGGCACAAGGAAAGGAGACTGAGGAGAGCATTTCTGGTGCTCATTTTCCAGGCTAGGTGACCCAGCAAGGGGAGCATCTGAATAACAGGATCCTTTTGATCCATCAGCAACATTCTTTGCCCTGCTGCTCAGCTGGCTGTCACTGTCACACCTACTAATTGTTAGATAGACTCTAGTGCTGAAAGAGCAAATTGCAGACCAATTCCAGTACTTCCGTCTAGTGTGCTGGGAGAGCATGAGCTGTCTGTGGAAAGAAAAAGTGAGGGATGTGCCAGCTGCTGACCTCTGGGAAGGGGAGTGGGAACTTGCCCCTTCCTGGCATACCCTGCTGAGGGGCTGCTGCCCACTCTAAGAAAGGCCACAGACCAATAAATGCTAACTTGGTTGTTGTGTTAGCAGTCTCTCTATGGACTATGATCAGATAGAGACAGCTTTTTAAGGCTAGTCTTACAGGAAAAGGGGCCTAGGCTAGAGACATTTAATTGTTTTGTTAAATCATATATATATATATATATATATATATATATATATGTTAACCTTTATTCTGACTACCATACATCCTAAATTTGGTGCTGTCTACTCGTCTACTCATTTAAGGACAAGACAGTCATGAGTCATTGTAATGACAGAAAAGCATTAAATCGCAGCTGTACTTTTATTTTCCTAAAGGATCTTGAGCCATGAATAACATGAGGATCGGCTCTAATGGGGCAGAGATCTTGCGCAGTGTCAGGAGGCACAGGTGGGGCACACAGAGATCTGGGACCACTGATGAAACTTCTCAGATCCTTTCTTGTCACAGTAAATGTGCTCTGGCCCAGATTAATGTGTGAAGTCTCTAGATAACGTGTGCTATTGCATCATTTATACAGAAATAATCATGAGATACCTCTCATTTTATATTTAGCTACATAGTATGTGTTATATTTTCCAGGAAGCTACATCCCATAAATATTAGTCTCAGGAAGGTTAAGTAGCTGTCCCCAAGTCACACAGCTGGGAAATAGTAAAGCCAGACTAAAAGTGAGGTCACTCAATTGTTGCAGGGCCCACCTGCTCACCGCCAGGGGAGTGTTTCTCAGAGTGGAGCCTAACAGGCTTAAGAACCCAACAGCAGGAGGAAAAGTTGATCTGAAGGTTTTCTCTCCAAGACAACGCACTCTTCCATGCTTCCTGAGCATGGCCAGAGCTAGCTTCTGAGTGTGGGTATGATTAATGCTTTTGATCACAGGATGAAGTTGTTGAGGTGGATTCAAATCCCTCACTACTTCAATTCAAGTGTGCATTTGCTGAAGGTGAACCCGAGGCATCATCTGTGTCCACAGGATGGCTTCTTCATTAGGGTCTGGAAAAAAGAATCAGTTTTTCTCACTGTGGGACTGTGAGCATTATATTGATTTTTAATGCCAGATATTATACGGCCACAAGACAGTTCAGCCCAAGAAGGATGTGTATGTGGGTGAATTCATTCAGTGGAGGGAACAGAAAATTTGACTTAACACACAAGAATAATTGATCTGTATGAATACTAAATAGAATGTCTATACAGTCAGACAGTCTGAATGAAAATTGTTTTCCCTGCTGCATTTTTTTTCACTTTTCTAAAATATGTTGTATATGATTTCAGAGACATTAGAAAACATGTTATAATTTGTTATAAGATGTTATAATTTGTCTCATCTATGGCACATATAGGCTTCTTTAGTGAATATGTATGTATATTCACACACATATGCACTCTTTTCCAAAGGTGCCTTTACATTTTGATGGTGAAATTAGTTTTAGGAGATACATTTTAAAATTGTAAAATAACATGAATGAACTGTTTCCTTCCATAACCGTTTTTGCCCTTTATTCACCATCTGAATGAACCAG
Seq C2 exon
ACACCAGATAGAAAGTGGTTAATTTTTGATGGGCCAGTAGATGCAGTATGGATTGAGAATATGAACACTGTGCTGGACGACAACAAAAAGCTATGTCTGATGAGTGGGGAGATTATCCAAATGTCGCCACAAATGAATCTTATTTTTGAGCCGATGGATTTAGAAGTTGCTTCTCCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(41.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]