RnoINT0049093 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60224510-60233787:-
Coord C1 exon
chr9:60233638-60233787
Coord A exon
chr9:60224693-60233637
Coord C2 exon
chr9:60224510-60224692
Length
8945 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
CCACTCTGTATGTAAAGTAGACT
3' ss Score
1.74
Exon sequences
Seq C1 exon
GGGCTAATGGAAGAAAACAAGGTTCAAATAACCGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTAGTGTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCTTTCGCAGCTTCCTCG
Seq A exon
GTAAGAGTCTGCCTCTTCACATGCAACTTTTTCGAGCAAAGCATGTTACTGGAGGCTTTTGTGGTATTTCTGTGAGGAATGATGATAGCGCATACAAGAACAGCACAGACCATGTCCCCGGGCGCCGCTGGCCTGGAGGTCCTTAACAGAGCTCTTGGAAGTCAGGATAGTAGATGATTCCAGTGATGTGGCATGCAGACTCCTCTCGGACATCATTTCTGTCTGCAGTCTGAGCTGCTGCCCTTGTCATACCCTTGTTAGAAATACTTGAGAACAAAAGTATCCAGTGTTCCAGCACTTTCCATGTAGTATGCTTGGAAGAGAAGAGGTTGCACTGTGGAAAACAGGAAGAGACATTCCAGGACTGGCGTCTCTTCTGTGCCTTGTCCTGTAGGGGTAACTGTCACACTCATAAGCAGAGTCCAAAGAGTGTGTGCACAGGCCCAGAACAATGTAACATGAAGCTTCTAGACAATGTAAACAGACACATCATTTACATGGAAACAGCCATGGGGTACCTCTGTGCATTCATTGTGCCATCACATAGCTTACATTACATTGTGTAGAAAGCCATGCCCTATGTACACCAAATCTCAGTGAGATGCAGTAGTTAACTGGAAAAGAGTAGAGCAGGGTGAAAAGGGAAGTCTTCAGATGATGAAGCTCAAGGTCACAGGAGTGTCCCCAAAGTGACAGTTGACAGGCACTGGCAGAAGAGTTAAATGGAGTGTTGGTCTCAGAGTGATCACCCAGAGCATAGCGTAATCAGAACCCTTCCGTGCTGCCCTCCTGAGTTCTGAGCACACAAGCGCCAGCCTCAGTATGAACATAGGACAGCCTGACCCTGGGGCAGCTCACGGTCCTATGGAGTTAACCATGGGATCTGAGATTGTGGTAAGAAGAACTTAATTCCATCACCACTGCAACTCATGTTAGGTGACAGTGAACCAAGCATCATTTGCAAAAATGAGCAAGTAGAATTCTATGAATCAGAAAGGTGGTTTTCAGGATAATGTGTATTTTTATATTTTATAACATTTGTCAGACCATTGTACTAATTTTGTGTTATTTATACATCACTGGTGTATATTATTCCTGGTGTACAGAACTTTGTGTGAATATTATAGTGATTTTTTTTCACATCCCCTACTCATGGTTCTCAACCTGTGGATCACAACCCCTTTGTGGGGAGAATGACTTTTTCACAGGGATCACCTAAGACCACTGAAAAACACAGATAACTACATTACAGTTCATAAGAGTAGCAAAATGACAGTTATGAAGTAGCAATGAGAGTAATTTTATTCTTGGAGTCACCACAACATGAGGAGCTGTACTGAAGGGTTGCAGCATTAGGAAGGTTGAAAACCTTACATCCTTACAAGACAGTTCAGCCTAGAAGTGGCACGCGCGTGAATGTGTGTGAATTTATTTCTTAGAAGGAAACAAGGGCCTGCAGCAGCTCTCTGCTCCCAGACACCGTAGGGGAGACCCGACCCCCTGGTCAGGTGGGCACTCCTGAGGCTGCAGACCGGAAGAGACCACCAACACTGCCCACCCCTGCCCACATCCCTGGCCCAAGAGGAAACTGTATAAGGCCTCTGGGCTCCCGTGGGGGAGGGCCCAGGAGCGGCAGGACCCCTGCCTGAGACACCTCCGGAACCTGAAGGAAACAGACCGGATAAACAGTTCTCTGCACCCAAATCACGTGGGAGAGAGAGCTAAACCTTCAGAGAGGCAGACAAGCCTGGGAAACCAGAAGAGTCTGCTCTCTGTACATATATCTCCAGAGGAAAATACCAAAGGCCATCTGGAACCCTGGTGCACTGAAGCTCCCGGAAGGGGCGGCACAGGTCTTCCTGGTTGCTGTCGCCGCAGAGAGCCCGTGGGCAGCACCCCATGAGCAAACTTGAGCCTCGGGACCACAGGTAAGACCAACTTGTCTGTTGCAAGAAGGCTGCCTGGTGAAATCGGGACACACAGAGGCAGAATTCCTCTAGGACCGGACACGTCCTGTGTTTACCGGAAGTCCCACACCCGCGGATCCCTGCCCGCAGCAGCTCTCTGCTCCCAGACCCCGTGGGAAAGAGATCTCACCGCCTGGTCAGGTGGGCACTCCTGAGGCTGCATAAGCTCCCGGAAGGGGCGGCACAGGTCTTCCTGGTTGCTGCCGCCGCAAAGAGCCCGTGGGCAGCACCCCGAGAGCGAACTTGAGCCTCGGGACCACAGGTAAGACCAACTTTTCTGCTGCAAGAAAGCTGCCTGGTGAACTCAAGACACAGGCCCACAGGAACAGCTGAAGACCTGTAGAGAGGAAAAACTACACGCCCGAAAGCAGAACACTCTGTCCCCATAACTGGCTGAAAGAAAACAGGAAAACAGGTCTACAGCACTCCTGACACACAGGCTGATAGGACAGTCTAGCCACTGTCAGAAATAGCAGAACAAAGTAACACTAGAGATAATCTGATGGCGAGAGGCAAGCGCAGGAACCCAAGCAACAGAAACCAAGACTACATGGCATCATCGGAGCCCAATTCTCCCACCAAAACAAACATGGAATATCCAAACACACCAGAAAAGCAAGATCTAGTTTCAAAATCATATTTGATCATGATGCTGGAGGACTTCAAGAAAGACGTGAAGAACTCCCTTAGGGAAACACAGGAAAACATTAATAAACAAGTAGAAGCCTACAGAGAGGAATCGCAAAAATCCCTGAAAGAATCGCAAAAATCCCTGAAAGAATTCGAGGAAAACACCATCAAACAGTTGAAGGAATTAAAAATGGAAATAGAAGCAATCAAGAAAGAACACATGGAAACAACCCTGGATAGAGAAAACCAAAAGAAGAGACAAGGAGCTGTAGATACAAGCTTCACCAACAGAATACAAGAGATGGAAGAGAGAACCTCAGGAGCAGAAGATTCCATAGAAATCATTGACTCAACTGTCAAAGATAATGTAAAGCAGAAAAAGCTACTGGTCCAATACATACAGGAAATCCAGGACTCAATGAGAAGATCAAACCTAAGGATAATAGGTATAGAAGAGAGTGAAGACTCCCAGCTCAAAGGACCAGTAAATATCTTCAACAAAATCATAGAAGAAAACTTCCCTAACCTAAAAAAAGAGATACCCATAGACATACAAGAAGCCTACAGAACTCCAAATAGATTGGACCAGAAAAGAAACACCTCCCGTCACATAATAGTCAAAACACCAAACGCACAAAATAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAGACCTATCAGAATCACACCAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACTGATGTCATACAGACCCTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCCTGCAAAACTCTCAATTAACATACATGGAGAAACCAAGATATTCCATGACAAAACCAAATTTACACAATATTTTTCTACAAATCCAGCACTACAAAGGATAATAAAGGGTAAAGCCCAACATAAGGAGGCAAGCTATACCCTAGAAGAAGCAAGAAACTAATCGCCTTGGCAACAAAACAAAGAGAGGGAAAGCACACAAACATAACCTCACATCCAAATATGACTATAACGGGAAGCAATAATCACTATTCCTTAATATCTCTCAACATCAATGGCCTCAACTCCCCAATAAAAAGACATAGATTAACAAACTGGATACGCAACGAGGACCCTGCATTCTGCTGCGTACAGGAAATACACCTCAGAGACAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCAGAAGAAGCAAGCTGGAGTAGCCATTCTAATATCAAATAAAATCAATTTTCAACTAAAAGTCATCAAAAAAGATAAGGAAGGACACTTCATATTCATCAAAGGAAAAATCCACCAAGATGAACTCTCAATCCTAAATATCTATGCCCCAAATACAAGGGCACCTACATATGTAAAAGAAACCTTACTAAAGCTCAAAACACACATTGCACCTCACACAATAATAGTGGGAGATTTCAACACCCCACTCTCATCAATGGACAGATCATGGAAACAGAAATTAAACAGTGATGTCGACAAACTAAGAGAAGTCATGAGCCAAATGGACTTAACGGATATTTATAGAACATTCTATCCTAAAGCAAAAGGATATACCTTCTTCTCAGCTCCTCATGGTACTTTCTCCAAAATTGACCATATAATTGGTCAAAAAACAGGCCTCAACAGGTACAGAAAGATAGAAATAATCCCATGTGTCCTATCAGACCACCACGGACTAAAACTGGTCTTCAATAACAATAAGGGAAGAATGCCCACATATACGTGGAAATTGAACAATGCTCTCCTCAATGACAACCTGGTAAAGGAAGAAATAAAGAAAGAAATTAAAAACTTTTTAGAATTTAATGAAAATGAAGGTACAACATACCCAAACTTATGGGACACAATGAAAGCTGTGCTAAGAGGAAAGCTCATAGCGCTGAGTGCCTGCAGAAAGAAACAGGAAAGAGCCTATGTCAGCAGCTTGACAGCACACCTAAAAGCTCTAGAACAAAAAGAAGCAAATACACCCAGGAGGAGTAGAAGGCAGGAAATAATCAAACTCAGAGCTGAAATCAACCAAGTAGAAACAAAAAGGACCATAGAAAGAATCAACAGAACCAAAAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTAACGAGAGGACACAGAGAGTGCGTCCAAATTAACAAAATCAGAAATGAAAAGGGAGACATACCTACAGATTCAGAGGAAATTCAAAAAATCATCAGATCTTACTATAAAAACCTATATTCAACAAAACTTGAAAATCTTCAGGAAATGGACAATTTCCTAGACAGATACCAGGTATCGAAGTTAAATCAAGAACAGATAAACCAGTTAAACAACCCCATAACTCCTAAGGAAATAGAAGCAGTTCTTAAAGGTCTCACAACCAAAAAGAGCCCAGGTCCAGACGGATTTAGTGCAGAATTCTATCAAACCTTCATAGAAGACCTCATACCAATATTATCCAAACTATTCCACAAAATTGAAACAGATGGATCACTACCGAATACCTTCTACGAAGCCACACTTACTCTTATACCTAAACCACACAAAGACACAACAAAGAAAGAGAACTTCAGACCAATTTCCCTTATAAATATCGACGCAAAAATACTTAACAAAATTCTGGCAAAACGAATTCAAGAGCACATCAAAACAATCATCCACCATGATCAAGTAGGCTTCATCCCAGGCATGCAGGGATGGTTTAATATATGGAAAACCATCAACGTGATCCATTATATAAACAAACTGAAAGAACAAACCAACAAAACAAAAGAACATGATCATTTCATTAGATGCTGAGAAAGCATTTGACAAAATTCAATACCCCTTCATGATAAAAGTCCTGGAAAGAATAGGAATTCAAGGCCCATACCCAAACATAGTAAAAGCCATATACAGCCACCAGTTGCTAACATTAAACTAAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTACTTATTCAATATAGTTCTTGAAGTTCTAGCCAGAGCAATCAGACAACAAAAGGAGATCAAGGGGATACAGATCGGAAAAGAAGAGGTCAAAATATCACTATTTGCAGATGACATGATAGTATATTTAAGTGATCCCAAAAGTTCCACCAGAGAACTACTAAAGCTGATAAACAACTTCAGCAAAGTGGCTGGGTATAAAATTAACTCAAATAAATCAGTTGCCTTCCTCTATACAAAAGAGAAACAAGCCGAGAACGAAATTAGGGAAACGACACCCTTCATAATAGACCCAAATAATATAAAGTACCTCGGTGTGACTTTAACCAAGCAAGTAAAAGATCTGTACAATAAGAACTTCAAGACACTGAAGAAAGAAATTGAAGAAGACCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTAAAAATGGCCATTTTACCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATACCAATCCAATTCTTCAAAGAGTTAGACAGAACAATTTGCAAATTCATCTGGAATAACAAAAAACCCAGGATAGCTAAAGCTATCCTCAACAATGAAAGGACTTCAGGGGGAATCACTATCCCTGAACTCAAGCAGTATTACAGAGCAATAGTGATAAAAACTGCATGGTATTGGTACAGAGACAGACAGATAGACCAATGGAATAGAATTGAAGGCCCAGAAATGAACCCACACACCTATGGTCACTTGATTTTTGACAAAGGAGCCAAAACCATCCAATGGAAAAAAGATAGCATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGTCAACATGTAGAAGAATGCAGATCGATCCATGCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAGGGATCTCCACATCAAACCAGACACACTCAAACTAATAGAAGAAAAACTAGGGAAGCATCTGGAACACATGGGCACTGGAAAAAATTTCCTGAACAAAACACCAATGGCTTACGCTCTAAAATCAAGAATCAACAAATGGGATCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAGGACACTGTGGTTAGGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCTACAACAGATAGAGGCCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACCGTAGGGAAACAAATAACCCTATTAAAAATGGGGTTCAGAGCTAAACAAAGAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAACATCTTTAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCAGTGAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGCGGAGAAAGATGAACACTCCTCCATTGTTGTTTGGATTGCAGACTGGTACAACCATTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATTGAACTGCCTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCTCAACATATAAAAGAGACACGTGCTTCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGAAACTGGAAACAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAAAGAGTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCAAACACAGAAAGACATACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATCCCTAGAACAAACGAAACTCAAGACGGATGATCAACATGTGAATGCTTCACTCCTTCTTTAAATGAGGAAAAAGAATACCCTTGGCAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCATATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGCCAGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGTCCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCATATGTACAACAATGTCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAATACTATACATGGACTGACCCTGGACTCTGACCCCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCCAGTGAACTAGACTATGGGGGGAGGGCGGCAATGGGGGGAGGGTTGGGAGGGGGACACCCATAAGGAAGGGGAGGGGGGAGGGGGATGTTTGCCCGGAAACCGGGAAAGGGAATAACACTTGAAATGTATATAAGAAATACTCAAGTTAATAAAAATAATAATAATAATAAAAAAGAAAAAAAATTAAAAAAAAAAGACTATACATGGAGTGACCCTGGACTCTGACCCCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGATGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGACTATGGGGGGGAGGGCGGCAATGGGGGGAGGGTTGGGAGGGGAACACTCATAAGGAAGGGGAGGGGGGAGGGGGATGTTTGCCCGAAACAGGGAAAGGGAATAACACTTGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAATGGTAAATTAAAAAAAAAGAAGGAAACAAAATTTTAGCATAGTGCATAGAAGTCATTAATTGTAGTAGAATTCATGATAAGAGGGACCTATTAGAGAATGCTAAGAACAGGTATATTTGGATGAACATTTTATTTTCCCTATCAATATTATTTTCAGTTCTAATATTTTAAAAGCAGTTTTCATGTATTTAGCCTTGAAAGCATTGAAAAGAACGAGTCAAGTAAGATGTTATAGTTTTGTCTTGTGTATGGCATATGTAGGCTTCTTCAGTCTATGCTTGTGTATGTGTGTATGTGTGTGTGTGTGCATGTGTGTGAGTTTAAAGAGTACTATGGTTCATTTTAAAGAGTACCGTTTTATGTTTTCATAGTAAAATACATTATACTTCTAAATTTTGAAATATTATTGATCCGTATTCTTCATACATTTGCTCTTTATCCACTCTGTATGTAAAGTAG
Seq C2 exon
ACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCGGTGTGGATTGAGAACATGAATACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGCGGGGAGATTATTCAAATGTCACCACAAATGAATCTGATCTTTGAACCAATGGACCTAGAAGTCGCCTCTCCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(41.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]