GgaINT0050144 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10722572-10724421:-
Coord C1 exon
chr7:10724272-10724421
Coord A exon
chr7:10722755-10724271
Coord C2 exon
chr7:10722572-10722754
Length
1517 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTCTTTCTTTTCACCAGACC
3' ss Score
10.84
Exon sequences
Seq C1 exon
GGGCTGATGGAAGAAAACAAAGTTCAGATCACAGTTTTAAATCCCAAATCCATAACAATGGGTCAGCTATATGGACAATTTGATCCAGTTTCACATGAATGGTCAGATGGCATCCTAGCAGTGAGTTTCAGAGCATTTGCTTCTTCCCAA
Seq A exon
GTAAGTGCGAACAGGATTAAAGTATTGTTGGAAATGACCTTTCAATACATGCATTTAGGACTTCAGTTCTATGCTGTGTTCACAACAAGCGTAGGATTCATAAGCTTAACTATTTGAATGCAGAGACTACAGGTTGTTTTAGTTCTGCTTTGCTACATGCACGTGACTTTCTGGGTGCTGGTAAATTAAGATTTGTGTTTCAGAAACCCTTATGTAAAAACAAATTTTGTTGTTGTTCTTTGCATCTATTAGAGATAAATGAATATTTAATCTTTATACTACATAGTACTTTCTTATTTTGTCTGGTTTGGAATGAAATCTTCAATATTTATGTATATGGTAATTTTGATGTTAGTTTTGATGTTAATTTTGGATGAAACTGCTTTCTGAGCATGGCTTATGTCTGAACTTCCATTAAAGTCCACGGAAACATTTTGACTGAGTATAATAAAAGAAGGCTGAGAGAGATGGGGCTGTTCAACCTGGAGAAGAGAAGGCTCCAGGGAGACCTGAGAGTGGCCTTCCAGGATCTGAAGGGGTGGCTTTAAGAAGGAAGGGGACAGACTCTTTAGCAGGGTCTGTTGAGATAGTATATGGGGAAATGGTCTCATGCTAAAAGAGAGGAGATTTAGACTGGATATAAGGAAGAAGGTTTTTACAGTGAGGGTGGTGAGTCTCTGGAAGAGGTTGCCCAGAGAGGTGGTGGATGCCCCATCCTTGGAGACACACAAAGTCAGTCTGAACCAGGTTCTGAGCAGCCTGACCTAGTAAGTGTATGTGTTCGTGTTCATTGCAGGGGAGTTGGAGTAATGACATTGAAGGGTCCCTACCTATTCAAGCAGTTTTGTGATTCTACATATCTATGTGACAATTACTTGAGTTTTTGCTAGTGACTGTAGCATCTGACACTTAACCACTATAAACTTCAGTGAGCTAATAGTGTTTTGAAGTTAACTGATGTGAAGTTCGCTGTCTCTAATAGTGTTTACAGAACCGCAAAAGTGATTTGTATTTTGTTGCATAAGAAATACTATGACTATTTAATACCCTATGTAATACGCTATTTAAAACCTCTGACTATTTAATTATCTGCTAGAATACCATATTCCTTAAGTTAGGCCTATTGAATTCCATGGTGAATGTGGAGTATGTATTACTGATGGTTTGTATTTGTTGTATTAATAGTTATATTTTGTCCTAGGTATTTGAATGTGTTGTAGTTTGACTGAAGCAATCTACTGCTTTGCAAGTATAACTGAAAGTTTCTAGTAAAAAATATTAACCCTTTGTAGCTATCTACCATATATGCTTCAAAGTAATACACCCAAATTGTGAATATAGATTGCATGTGTGATTTCAGAAACTGTTTATGAATACAGCTTTGTACTTAGAATGTTTTTTAATTTTTTTTTGGTAGAAAAATTTTAGCGCTAAAATATTTCTTTTGCAGTGAACATAATAATAATAAAAATATCTGTGGAGTTTATTTTTTATTTATTTTTCTTTCTTTTCACCAG
Seq C2 exon
ACCCCAGATAGGAAGTGGCTAATTTTTGACGGACCAGTGGATGCAGTATGGATTGAGAATATGAATACTGTGCTTGATGATAATAAAAAGTTGTGCCTTATGAGTGGAGAGATCATCACAATGACACAGCAAATGAGCCTTATTTTTGAACCAATGGATTTAGAAGTTGCTTCTCCTGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(41.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGATGGAAGAAAACAAAGT
R:
AGTAGCAGGAGAAGCAACTTC
Band lengths:
333-1850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]