DreINT0058153 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25203004-25205212:-
Coord C1 exon
chr9:25205063-25205212
Coord A exon
chr9:25203187-25205062
Coord C2 exon
chr9:25203004-25203186
Length
1876 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTGTGCTGTCTCCCTAACAGAGT
3' ss Score
9.89
Exon sequences
Seq C1 exon
AATCTGATGGAGGAGAACAGGGTTCAAATCACTGTGATCAACCCCAAGTCTATCACTATGGGCCAGCTATATGGCCAGTTTGATCCCGTCTCCCATGAGTGGTCAGATGGAATCTTGGCTGTAAGCTATAGGGCATTCGCCATTTCCCAG
Seq A exon
GTACTGTTACTATTCCATATATTTCACATCTGTCACTCTCTCCTTCTAATTATTCATTTAGGTTCATTCGTTCGTTTGTTCGTTCGTTCGTTCGTTCGTTCGTTTGTTTGTTCGTTCGTTCGTTTGTTCGTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCTTATCACAGTTCCAAGACTTTTTCTTCCTCTTCCTATTATGCATCCATTTATCAATCCATTCCCCCTCCTTCTATTCATTCTTCTGTTTACTTCAGCTACTATTATGCATCCATTCACCCTCTTTCTATTCATTAACCTATCCGTCTACACTGCTGTCCATTCATACATTTGTTCATTCAAATATATAGATATCCATCTAGCCCTCCCCCTTTTTATCCAAATATATCTGTTTACATACACTCATCCCTACCATCCTTACTACGTTCAGACATTCACAATGTCCTTTTATCCCCCATAGAGTTTTTGTCCCTGTTTTACTTCACCCTTTATTATATTTCCCTGCCATCCTTTCATTTATCCATCTACTTTAAACATGCAAACATTTATGCATCCATTTTTTGTTTACATATAGAACTAGACCTCTTTCCTTTCATTTATTCATCAATCCATCTCTCCATTTAGCCCTCATTCCCTCTGTTTATCCGGTTATATCTCTCTTCTTTCATCCATCCATACATCCATCCATGTAGATTATTTATTCTTCTGTTTGTTCATTCCTACATTTATTCATCCATTTGTTATAGTTTATCCATAGATCTGCTTCTGTCCATCCATTTCTCCATCCGTCTGTCCTTTTGTTCATCCTTCTTTTCAGTCATCCATTTTTTTGTTCATCCATCCATTCGCCCATCTTTTGTTTTGGATTGAAACATATATAACAATGAATGCTAAATTTAAAAACTGCTGTCTGACATGCACATCTTTTATTTGTTTTCACCATGATAACACTAAAGCAGGTCGCACACCAGAAGCGCCGCTCGGCGGCGCGCCGCGCAGCGCCACGCCGCACCATGCATTTTAGAATTCTAATCATAGGTTTCTATCAGGATACACACACCGGCGCCGCAAGTCGGCGGCTGTCGGCGGCGCCCGGCGACGGCTCAGGACGCAGTTCATTTTTCAGCCGCGCCACAGAGCGCCATCTGATTATTTTCATGTTAAATATCATTCGAATGTGCGCGTCTGGTGTGTGATACCTTAAACTGTCATGTACGCGCCGTGTCGCGGCGCCGAGCGGCGCTTCTGGTGTGCGACCTGCTTAAGCCTAAATATCATAGTTCAGAGTTCAGTCATTGCCACATTCCTAAAGATTACAGTTCAAACCTTTGTTTCTTTTGCTCACAATTAAAATATTTGCATTTAAACAGTTGTCATAAGACAGAGTAGAATATTATCTATTGTACAATAAGAAAGTGGTGAAAAAATTAGATGCTCTTATAGCTGTAATTATAGCTGTAATTTAGCAATAAAAAGCAAAATAAGAGTAGGCAGTTGCCAGATGTTTGCCACTAGCTCATTTTCGTATTTGATTTTCACAATCATGACCATTTTAGTAAGAAATTGTTTTTTTTTTTTAGGGGAAAGTATGTCAAAACAATGCAAGCATTTCATGCATGTGATATGTTAAACTCATTTTACAGTGTTTAAGTTTTAGCATTAATATTTTTTTGACTGAAAAAACTTTCATAAGAAAATCATTAGACTGAAATGTGTAATTCTTTCAGTGTCCTACAGCAGGAAATATAGTATATACAATATTCTGCATTTTATTGAGACTTAACACACTTCAAAGTTGAGGTTAGATTGTTCAATGTTTAAATTAACTGTGTGCTGTCTCCCTAACAG
Seq C2 exon
AGTCCTGATAGAAAGTGGTTAATATTTGATGGGCCTGTAGATGCAGTGTGGATTGAGAACATGAACACAGTGCTGGATGACAACAAGAAGCTTTGTCTCATGAGTGGAGAGATCATCCAAATGTCCCCGCAGATGAGCCTTATCTTTGAGCCCATGGACCTGGAGGTGGCTTCGCCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(41.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGAGGAGAACAGGGT
R:
CAGGTCCATGGGCTCAAAGAT
Band lengths:
310-2186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]