BtaINT0050686 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84987665-84989777:-
Coord C1 exon
chr2:84989690-84989777
Coord A exon
chr2:84987846-84989689
Coord C2 exon
chr2:84987665-84987845
Length
1844 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACA
5' ss Score
2.99
3' ss Seq
TCTTGCTCTCTTTTCTATAGAGA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GCAACAAGATGCTGCCTTAGACTCAGCGACTCCTGATGAAAGCACACTTCCAAAACTAACCACTTCTGCAATAGAGAAAGACATCTTG
Seq A exon
GTAACAAGATATTTCTTTGTCAGTATAATTAAAAGTAAAGGAAGACCTTGAAGGTGCTTTTATGCTTTTGAGATTATTCTGCACTTCTTCCTTATGGAACTATGTGAATGTGAGAGTAAATATGAAGTTCTATAAAATTGCTCTGTTGGATGAATGGAGGAAATCGTACTCTCCCTTGTCTCCTAAGACCACAGAGAATCTCAAGTCTCCTTGCTCCTATGTTAAAGCTAGCCTCATCATGTATAGCTTTTCCATGTCTTTATTCTATGAGAAATTATCTTAGTTATGTAATGTACATTTCACAAACCATATCAGCTTACTTTATTTTTTTGTTTTTTTTTTTAGCTTACTTTAAAAAAGTGATTCTTCAAGGATTTCAAATATAAAAATTTTAAAAAGTAAATATCAAAGACTTTAACATTACTAATTTGAAAGTATTTTGATATTTGAATTCTTTTCTAAGTGACTTGTAAAAGCTTGTGAAAATACATTGAAGTTAAATGCCCATTACTAGAGAAATACTGTCACATTTTAAATTAATTTCTCATGCACACATTTAACAACATTTGAAAATTATGGTATGGACTACCAATAGGCCAATTGGAAATTTCATAAATCCTATGGTATAATATTTCTGAGACTAATGAATAGGGAATATTGATTCACTTACAGCTTTTAATATCTACTTCTGATTGACAATAATACAAGGTCCCTAAAGCCAATTTTCACACAATTCTACTTCCACGTGGGTTCTGTTTAGCGTATTACATATTTGGTAATCTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAAAGAGTCGGGACACGACTGAGTGACTGAACTGAACTGAACTGAACTTCATGTTTATAACATAGTTATGAATTAAGATAAGAGCTTTGACTTTCATGAGATAAAAATCATCTTTTTAATATAAGTAAGTAAGTGAAGTCACTCAGTCATGTCCGACTCTTTGCAACCCCATGGACTGTAGCCTACCAGACTCCTCTGTCCATGGGATTTTCCAGGCAGGAGTACTGAATGGGTTGCCATTTCCTTCTCCAAGGGATCTTCCCGACCCAGGGATCAAACCCGGCTCTCCTGCATTGCAGGCAGATGCTTTACTCTCTGAGCCACCAGGGAAGCCCCAAATAGGAGAGATCAGATAATACCAGGGCTTCTAAGGTGGTACAGTGGTAAAAAACCTGCCTGCCATGCAGGGGACACAAGGAAAGTAGGTTGGATCCCTGGGTCGGGAAGATCCCCGGGAGTAGAAAATGGCAACCTACTCCAGTATTCTTACCTGGAGAATCCCATGAATAGAGAAGCCTGGCAGATTACAGTCCATGGGATCATGAAGAGTTGGATTCGACTGAATGACTAAACAGAGCACACACAAATAATGGCAATACAAATTGCAGAAGACCATTTTTTATAATTTGTAAATTATTTGTTCTAAAACTTTAATTTTGCTAAGTAGTTTTATTTTTGATAAATACTTCTCTTATTATAGTACTAAAGTGAAAGTGCTAGTTGCTCAGTCATGTCTGGCTCTTTGCAGCCCCAGGGACTGTAGCCCACCAGACTCCTCTATCCATGGCATTCTCCAGCAAGAGTGGGTGGCCATTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGAATGAACCCAGGTCTCCTGCATTGCTGGCAGATTCTTTACCATCTGAACCACTAGGGAAACCCATTATAGTACTAAACCCATCTCCATTTCTTGCTCTCTTTTCTATAG
Seq C2 exon
AGATATTACTATTATATCCACCATGGAATTGATACGGACCATGTAGCACCAATGGAAGATTCTTGGCTGGAGCATGTATTGAATTTAGTCCCCCAGCATCTGAAAGTCCTCACTAACAGCATACTTGCATTGTCTGATGAAATGAGAGAAGATTATCTTCTTAGTGTAAAAAAATCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAAGATGCTGCCTTAGAC
R:
TTCTCTCATTTCATCAGACAATGCA
Band lengths:
238-2082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]