HsaINT1011574 @ hg38
Intron Retention
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196026760-196028047:-
Coord C1 exon
chr2:196027960-196028047
Coord A exon
chr2:196026941-196027959
Coord C2 exon
chr2:196026760-196026940
Length
1019 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACT
5' ss Score
4.27
3' ss Seq
TTCCTATCTTCTTTTTGTAGAGA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCAACAAGATGCTGACTTAGACTCAGCTGTCCCTGATGGAAGCACAATTCCAAAACCGACCGCTTCTGCTATAGAGAAAGACATCTTG
Seq A exon
GTAACTGGCCATTTGTTTTGTCTGTATAATTGAAAAGGAAAGAAACACTTGAAGATAATTTTATACTTTGGAGACCACTCTGTGCTTCTCCTTTGTGAAACTCTGTGGACATAGGAATAAATACAGAGTTCTATAAAAAGGCACCATGGGATTTGTAGAAGAAATCATTCTCTCCCTTGCCACCTAAGACCACAATTTAAAAAAATTTCAAATCTACCTGCTCTCCATATTAAAGCCAGCTTCAGTCATGTATAGCTTTACATGCCTTAATTTTTTTATGAGAAATTATCCTATAATAATTATATAATGTATATTTTACAAGGCATATTAACGTACTTTAGGAATAGTAATTCTTCAAGTATTTAAATACATAATAATTTTTTAAAATGTAAATATCAAAGACAACACTGCTAATTCAAAAGCATTTTGACATTTAAATTTTTTCTAATAAGTGACATGTAAAAATTTGTGAACGTATATTGAAGTTAAATGTTCATTATTATAGAAATAATAACTTGTTTTAAAATGAATATTTTATGAACACACACAATAGCAGCTATAAAATTATAGTATGGAATATTAATAGGCCAGTTGGAAATGTCCTAAATCCTATTGTATAATATTTCTGGAATTAATATATAGAGATACTGATTTGCTTACAGCTTTTAAGATCTACTTCTGATAATAATAAAAAGAGAAAAACTAACAAATCATTTTTAAAAATTAACAAAACACTAATTCAGCATGGACTCTGTTAAGTACATCATATATTTGGTAATATAACTTGATGTTTTACAGTATAGTTATTAACTGAGATAAGAGTTTTAGTTTTCATGAAAATACACATTTGTAACATTTAGGAGATCTCAAATAATACCTATGTGAATTGTACCAAATACTTTTTTATGCTTTATAAATACTTTGTTCTCCTAAAACTTGAATTTTGCTTGGTAGTTTTATTTTTGATAAACATACTTCTTTTGTTAAACATCTACATTTTTCCTATCTTCTTTTTGTAG
Seq C2 exon
AGATATTACTATTATATTCACCATGGAATTGATACAGACCATGTAGCCCCAATGGAAGATTCTTGGCTAGAACACGTACTGGATTTAGTTCCACAACATCTGAAAGTCTTCACTGACAGCATAGTTACATTATCTGATGAAATGAGAGAGGATTATCTTCTTAGTGTAAGGAAATCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997:ENST00000312428:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAAGATGCTGACTTAGACT
R:
AGATAATCCTCTCTCATTTCATCAGA
Band lengths:
246-1265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains