GgaINT1011573 @ galGal4
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9273817-9274320:-
Coord C1 exon
chr7:9274236-9274320
Coord A exon
chr7:9273998-9274235
Coord C2 exon
chr7:9273817-9273997
Length
238 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
TGCATTCTCCTATTCTGCAGAAA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GCAGGAAGACATTGCTGAAGAACCCCTTAATGAGTCTCAGCCTTCAACCGCAGATTCCTCTACACCAATAGACAAGGATATTGTG
Seq A exon
GTAGGTAAAGGCTATTTTCAAGAATATTAGATTTAAAACAGTGCCAATTATTTATTGTAAGTACAGACAGGGTGATTGATACAATGACAATTGTGAAAACAAAACAGCACTTATTACACTTATTAAACAGACACTAATTACGCTTATTTTTACTAAATAAGCCCATGTTTCACTGAATCCTGCACTATTAATTACTATCTATTACTGAACTTAACCAATGCATTCTCCTATTCTGCAG
Seq C2 exon
AAATACTACTATTACATTCGCCATGGAATTGATACAGCAAACGTAGCTCCACTGGATGAAGCCTGGCTAGATCACGTTTTAGTTTTAATTCCACAGCATCTGAAATCATTTGATGAAAGCATACGTTCACTGACTGATGAAATGAAAGAAGACTATCTTCTGAGTGTAAAAAAGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGACATTGCTGAAGAACCC
R:
AGTCTTCTTTCATTTCATCAGTCAGT
Band lengths:
237-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]