DreINT0058163 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25242457-25244249:-
Coord C1 exon
chr9:25244159-25244249
Coord A exon
chr9:25242638-25244158
Coord C2 exon
chr9:25242457-25242637
Length
1521 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
3' ss Seq
ATTATGACTCTTTCTTTCAGAGG
3' ss Score
8.45
Exon sequences
Seq C1 exon
GCACCGTGAAGATGACCCTGCTAAATCAGTCACAGAAATCAGCACCCCATCCACTTCAGGTCCACCTACTGCTGCAGAGAAAGACATTTTG
Seq A exon
GTAAAGGACAGACATTTATCTGCATGTTTATTTTATTTCAGTTTAGACATATAAAGTGCTTGAGATATTATATGAGTTGGCTATTTCTGCTTGATTAAAATGCCCATATTATACATGAAATAGGGTCATATCTTGGTTGTAAGGGTCTCCAACAACAGTCTAATATGCATGCAAGGTCAAAAAACACTTTCACGGTCTTATAATCTGCATTTATTTTTACCTAATTATTCCAGCGACTCCCGTATGAATCGACCAGTGATTCATTTGTTCCCAAACCCCTCCTTAGCGCGAAGCTAATCTGCGCTGATTGGACCGATGACAATCTGTTGCGATTGGTCGACTGCCTTCAGTCAGAAAGTGAAATGCCCAACAGCTAATCAGCAATATAAAAGTAATCACAGTTCATACACGCTCGATAGTGTAGGCGTGGATTTTAGCTGCCAGTGGGTCAATGTAAATACAGTCGATGGACTTGAAAATACAGACAACTAACTATTTTATTTAGCAAAAACTCAAAAAACTGTCGAGGAGATCTCCTAGCTTGTCTCACTCTGCTCTTTTCACAGACACACACACAAACACACATATTTTCCTCGTCCTTGCGCGCGCGCACACACACACACAAAAACACACACACACATCCGGACGACAACGCGCGCACACACACACACACACACATACCTCCGGATGACAGCGCATGCACACACACACACACACACACACACACACACACACGCACACACTACCCTCGTACACGGAGCTCCGTAAACAAAGCAGCACGCGTCGCGTTTTTAACGTGACTTTGCACGCGATAAGAGAATATAGCCAGTTAACCTAATACAGTACACGCAGTTACAAGTAACAAATCACAACTAAATACATTTGCAAGCTAGAGTAAATGAGGCAACAACTTTAATCGCGCATACTTACACTTGAGAAATGGAGGAAGAAACCCATCCTGACGTCCATCAGTAAGTTACTCTTTACTGATCCTTCCTTTAACAAACGCCGATGAAGTATTCTTTGTAGCATGTAGTTTGCAGAAGTTTCCAGTAGTTTCCAACTGCTTGGCTATAATGCTGAGGTTTCATCTTTGGGTAGAGACTGGATAATATCCGTCTGCAGTGTGACTTCAATCGACCGGCATGTTTGTGTGTGTGTGTTTGTGTGTGTGTGTGTCTGGGTTTCTGTGTCAGAGGGCGGGGCCGCAGGTTTCTCAGGGTTTGCGCGTGCACGTGAATAACTTGGTTTCGTTCGTACGTCATGGCGAAACACCTAATGACTCGGTATCAAGGCGACTCGTTTGAAGCACTATGAGTCGACTCTTTTATAGATGAATCAACCGTTTTAAACAACTTTTATTCTTACAGATTTAAGCCTTAGCTGGATACTTCACTTCACTTAGAGCTGTGTTACACACTACATGGAGGGGAATTTTCAAAATCCCATAATATGGGCTCTTTAAAACTTCTGTATATCCTCATCCAGTATGGACACAAACATTATGACTCTTTCTTTCAG
Seq C2 exon
AGGTACTGTTATTACATCCGCAATGGCATCGGCACAGAAGATGTGGCAGCCATGGAAGATTCCTGGCTTAAGAATGTTCTTGCTTTAGTCCCAGAACATCTGAAGAGTTTGACCAGAACCATTGAGGCTCTTTCAGATGAGATGAGAGAAGACTATCTGCTCAGTATCAAAAAAAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGTGAAGATGACCCTG
R:
TTTGATACTGAGCAGATAGTCTTCT
Band lengths:
262-1783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]