RnoINT0007662 @ rn6
Intron Retention
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59574432-59576323:-
Coord C1 exon
chr9:59576236-59576323
Coord A exon
chr9:59574613-59576235
Coord C2 exon
chr9:59574432-59574612
Length
1623 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACA
5' ss Score
2.99
3' ss Seq
CGCCTTCCCATTTACCACAGAGA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GCAGCAAGATTCGAGTTTAGAGCCCGATGTCACTGATGAGAGCGGCATTCCAAAAGCGACCACTTCTGCAATAGAGAAAGACATCTTG
Seq A exon
GTAACAACTCACTTCTGTCAAGAGAACTGTAACTAGAGGGTAGACCCCAGAATACTGCATGTCCTTGAGATTATTCTGTCCTTCCTTTGTATCTTTGTGTATGCAGGAATGAACAGAGAGCTGTGTCAGATTGTTCTATTATATTAATTATGAAAGCATTTTCTTTCTTGCCATCTAAGATCAGAGTTAAGCAATTCCAAAATCTGCCTGATCCCATCTTAAAGCTGTCTCAATCATATATATTTTTATCCAGTGTTATTCTTTTAGGACCATTTTTCTGAGTTATGATAATGTATATTTAAAAAAGCACATTCACTTATTTTAGAAGCAATACTCCAGGTACTTCAAATGCACAAACATTTTTTTAAATGTAAGCATTAAAAATTATAATATTGTGGGTTAGAGAGATGGTTTAGAGGTTAAGAGATCTGACTTTTAGAGGACCCGGTGTAATCTCAAGCACTCACATGGCAGTTTATAGCCATCTGGAACTCCAGGGAGTCCAACACACTTTTCCAGATTCTGTGGACAACATGCATGCATGCAGTGAACAGACATACATGCAGACAAAACACCTATACACATACAGAAAATAAAAGCATTGTGAATTTGAAAATATTTTGAAGTTTAATTTTCGCCCTGAGTGCTGTGTAAATAATTATGAAGAATGGAGAATTATCAGATTTTAAATCAAGTATGAGCATGTATAATATTTATAGCATAGTAAAGGATAGAAATGGGGCTGTCTTAATCAGTGTTCTACTTCTGTGAAGAGACACCAGGATGAAGGCAACTCTTATAAAGGAAGGCATTTAATTGGGGGGCTGGCTAACCGTTTCAGACATTTAGTCCATTACCATCATGGCAGGGAAAAAGGCAGCACGCCAGCAGGCATGATGCTAGAGAAGTAGCTGAGAGCTGCATACATCCTGATATGTAAGCAGGCAGGCAGGCAGGCAGAGAGGGGATGGAAGGTAGAGAGGGGCAGAGAGAGACAGAGAGAGACAGAGAGACAGAGACAGAGAGATAGAGAGGGTCTGGCATGGCTTTTGAAACCTCAAAGCTCACTTCTAGTGGCACACCCGCTCCAGCAAGGCCTCATCTCTTCATTAATCCTTCCAAACAGTTCACCAACTGGGGACTAAACGCTCACACATGTATGAGCCTATGCCATTCCCACTCAAACCAGCACAATTCAGTTCTGTTGCATGCTTCTAGAGTTAGTGTAAAAAAGATAAAAAAAAAAAAGCCACTGACTTGAATGCAGCTTTTAAGATTGACCTCTGATTATCAAAACTGAAAGAGCAGACCTAATAATACGTTCCAAAATTTTACCAACACCAACTTGCAATTCAGCATGCACTCTATTCCGTATCTCATCTATTTGATGATGTAACTTAGATGCTCGTGGTATAGTTGTGAACTAAGAAAGAAATGCTTTTGCTTCCAGGAAATAGCATTTTAAAAAATTAAGTGGTCTCAAACAATGCTTATGTGAATTTCACAAAAGCGCTTTGTATCATTTATAAATACTTTGCTCTCCTCAGACTTGCACTTCCCCTGTGGTTTTGCGTTCTGACCCCACACCTCCTTACTGCACCTCCGCCTTCCCATTTACCACAG
Seq C2 exon
AGATATTACTATTACATCCATCATGGAATCGATACTGATAACGTGGCCCCGATGGAGGACTCCTGGCTGGAGCACGTGTTGCAGTTGGTTCCACAGCATCTGAAAGTCCTGACTAACAGCATCACGGTCTTGTCGGATGAGATGAGAGAGGATTACCTTCTTAGTGTGAAGAAGTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194:ENSRNOT00000081963:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGATTCGAGTTTAGAGCCC
R:
CACACTAAGAAGGTAATCCTCTCTCA
Band lengths:
254-1877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]