MmuINT1008871 @ mm10
Intron Retention
Gene
ENSMUSG00000101337 | Dnah7c
Description
dynein, axonemal, heavy chain 7C [Source:MGI Symbol;Acc:MGI:3639762]
Coordinates
chr1:46465844-46467431:+
Coord C1 exon
chr1:46465844-46465931
Coord A exon
chr1:46465932-46467250
Coord C2 exon
chr1:46467251-46467431
Length
1319 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACA
5' ss Score
2.99
3' ss Seq
TGCCTCCTCACTTATCACAGAGG
3' ss Score
6
Exon sequences
Seq C1 exon
GCAACAAGATGGTGGTTTAGAGTCCGATGTCATTGATGAGAGCGGTATTCCAAAAGTGGCTACTTCTCCAAGAGAGAAAGACATCTTG
Seq A exon
GTAACAACTCACTTCTGTCAGTAGAACTGCAAATAGAAGGAAGAACTCAAAATACTGCATGTCCTTGAGAATTTTCTGTCCTTTCTTGTGTATCTTTGTGTGTGCAGGAATGAACAGAGAGTTTCATCAGATTATTCTATTAGATTGAGTGTTTTCTCTCTTGCCACCTAAGATCCCACTTAAGCAATTCCAAACCTCCGTGATCCCTTCCTAAAGTTTGTCTCAGTCATATACATCCTTATCCAACATTATTCTTTTATGATAATTTTTCTGAGTTATGATAATAGATATTCTAAAAAGCACATTAACTTATTTTACAAGCAATAATTCTGGTGTTTCAAATATATAAACATTTTTTGAATGTATGCATTAAGAATTATAACATCATAGACTAGAGAGATGGTTTAGAGAACTGGCTGTGGTACTGGACCCGGGTTTAATCCCAAGCCCTCACAAGGCAGTTTATAACCACAGGGAGTCTAACACCCTTTTTCAAATTCTATGGACAACATGCATGCATGTAGTGAACAGACATATATGCAGACCAAACACATAACATATACAAAAAATAAAAGCATTGTGAATTTGAAAATACTTTGAATTTTAATTTTTGCCCCAAGTGCTGTGTAAATAATTATGGAGAATGGAGAATTATCAGATTTTAAAATGAGAATTAACATGTATAATATTTATAGCACAATAAAGGATAGAAATGTGCTGTCTTAATCAGTGTTTTACTTCTGGGCCTGGCATGGTTTTTGAAACCTCAAAGCCCACTTTAGTGACATATCTCCTCCAACAAGGCCACATCTCTTAATCAGTCCTTCTGAACAGTTCACCAACTAGGGACTAAACACACAAATATATGAGCCTATGCCTTTCCTATTCAAACTAGCACAATTCAGTTCTGTTGTATGCTTCTAGAGTTAGTGTAAAAGAATACTGACTTGAATGCAGCTTTTATGATTGACCTCTGATCATCAAACATAAAAGTGCAGACCTAATAATATGTTCCAAAAGTTTGCAAACATCGACCTGCAATTGAGCATGTACTCTATTCCATACCTCGTCTATTTGATGATGTAACTTTGACGCTTATGGTATAGATGTAAACTAAGAAAAATTGCTTTTGCTTGCAGGAAATAGCATTTTAAAAACTTAAGAGATCTCAAACAATGCTTATGTGACTTTCACAAAAGTGCTTTGTATTATTTATAAATACTTTGTTCTCCCCAGATGAAATTTCCACTGTGGTTTTGTTTTCTGACCCTACTCTCCTTTACTGCAGTACTAAATCTCTGCCTCCTCACTTATCACAG
Seq C2 exon
AGGTATTACTACTACATTCGCCATGGAATTGATAGTGATCATGTGGCCCCATTGGAAGACTCTTGGCTGGAGCATGTATTACAATTGGTTCCACAGCATCTAAAAGTTATGACTAATAGCATCATGGTCTTGTCAGATGAGATAAGAGAAGATTATCTTCTTAGTGTAAAGAAATCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000101337:ENSMUST00000189749:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAAGATGGTGGTTTAGAGT
R:
TTCTCTTATCTCATCTGACAAGACCA
Band lengths:
238-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types