BtaINT0050729 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12695443-12696688:+
Coord C1 exon
chr23:12695443-12695550
Coord A exon
chr23:12695551-12696553
Coord C2 exon
chr23:12696554-12696688
Length
1003 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TATTTCTTTTCTCATCCTAGGTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
ATCATTATGCGAGTTAAACTTGCAAGCTGTGGTTTTCTTGAAAACGTTATCTTGGCTCAAAAGTTTTATGTACTTTACAAACTCTGTGAAGAGCAACTTACTAAGCAG
Seq A exon
GTAACTTTGTACATCTATTTTCCCCCTCACTATAGAACTTGTCTTTTAACTTGCAATTTTGATAAGTACTAATTAGGGAGTTAAAAAAATTCCTTGACTCTTTCCTAAGATATGTTTATAATTAACTTGAACTTTTGATTATGTATTTTAAAAACTTCCCTAAGTTGAAATAATTATAGATTCCCAGGAAGTTGCAAAGACATGTATGAGATGTCCTGTGTACTCGTCATCCTGTTGACATAATTGTAGTACAATAACCAAACCAGAAGATTGACAATGGACAATAAACAGAGATTCCTAAGACTTCACACGCACTCGTGTGTGTGTGTGTATGTGTGTGAAGTGAAATGAAGTGAAGTTGCTCAGTTGTGTCCAACTCTTTGCGACCCCATGGACAGTAGCCTACCAGGCTCTGCCGTCCATGGAATTTTCCAGACAAGAATACTGGAGTGGGCTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGAATCGAACCTGGGTCTCCTGCATTGCAGACAGACGCTTTTACCGTCTGAGTGTGTGTAGTTCTATCCAATTATGTCATAGAAAACAGAATTGTTTATCCCCACCAAGTACCCTCCCGCTACCCTTTATAGCCATACTTACCTCTTTCCCAAACTCTATGGCCCCTCATAGGCCTAATCTTTTTACGTCTCTGTAATTGTATTATTTCAAGCATGTTACATAAGGTGAATCACATAGTATGTAACCAGTTGGTCATGCATTTTAAATGGTTGCCCTTCAGACTATCAGAGTGTATTTTTCTCAGAAAATCATGTGTGAGCACTGTCACCCAGCTTGATGTTTCCAGTGAAGTCATCTTTTTCAGTCAAAAGAAAGGCAGGAGAAGTGAGCTAACAGAACTCTGCCACTCAGCCACTCCAAAACTATAGTATATAAGTACTGTATGTGCACAGTGAGTCTACACTTAGAATTTTTCAACTGGATGATCCTTTTTATTTCTTTTCTCATCCTAG
Seq C2 exon
GTTCATTATGACTTTGGGTTGAGAAATATTCTATCTGTATTGAGGACACTCGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCACGGTCATGAGAGGACTGAGAGATATGAACCTTTCTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTAAACTTGCAAGCTGTGG
R:
TTAGAAAGGTTCATATCTCTCAGTCC
Band lengths:
230-1233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]