MmuINT0051151 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30878253-30879735:+
Coord C1 exon
chr17:30878253-30878360
Coord A exon
chr17:30878361-30879600
Coord C2 exon
chr17:30879601-30879735
Length
1240 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCTCTTTCCCCTGCCCTAGGTC
3' ss Score
11.83
Exon sequences
Seq C1 exon
ATCATTATGCGAGTTAAGCTTGCTAGCTGTGGCTTTCTTGAAAATGTTATCTTGGCGCAGAAGTTTTATGTTCTCTATAAACTCTGCGAAGAGCAGCTTACTAAACAG
Seq A exon
GTAAGAACGCATATTTATTATTCCTGTAAAGAATTTAGGCTTTTGTTCCCATTTCTTTTTTTTTTAAATTAATGTGTATGCATGTGTGGGTATGTGTCTGTAAGTGTGGTACCCACAGAGTCAAGAAGAGGGCATCAGATTCATCTTAGACTCATAGCTAACTGGTTGGCAGCTGCCAGATATGGGTCCCTGGGAACTAAACTGGGGTCCTGAGACTGAACTTGGGTTCTCTGCAAGAGCAGTGTGTTCTCTTAACCCCTGATCTGTCTTTCCCGCTGTTGAGGCTAGATTTTTTTTTAAAGATTTATTTAATTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACTCTAGAAGAGGGCATCAGATCCCATTACAGATGGCTGTGAGTCACCATGTGGTTGTTGGGAATGGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCATGACTGCTGAGCCATCTCTGCAGCCCTCTGAGTCTAGATTTTAACTTTGCTATTTTACCTTGATAGATGCTAATCAGTGAGATTAAACAAACACACGGAGTCACTCCTAAATATATGCACAATGAACTTGACCCATTGAGCACCTGTTTACAAATGTTTTAATTCAGAGATACTTGGAGATTCTCAGGGATCGGGGTGGAAAAGGTCCAGGAAGATGTGTACCCTCCACCCCACTTCCTCTAGTATCAACATCTTGTAATAGAGCATAGAGATACAATTCAAGAGTTTTGCCAATTATATGTTCTCTTGGAGTGTGTGTGTGTGCCTGTGCGCACACATTTACATCACACATGAAGATTAATGTAACACCACCACAATCAACAGCCAGCACTCATATATTACAAGGTTCGCTTCTGCCGTCTTTGTACTCTCGACTTCCCATCTTCCCAAATCGCTAAGCTGTCAAAGCCACCGATCCTCTTCTCTGTCTGAGACGTTAGTTCAAGGATGCCATGTAAACGGAATGTGTGACTTACAGGCTCCGCATTTAAAAATCTATTGTCTGCCTCTCAGACTGCATTCAGCTGTCCTATTCTGAAAACAGACATCAGGTTTGAATCCTGTCATGTCACCTCGCTTTTTTTTTCTGACAGAAACGCTCCCTCTCCTCCCTCAAAGGGAAGGAAGATGAATTGAGCTGTCAACACTTCCAGCATGGCCACTCACCAACTGCAGCAGTGTATTGGAAGTTTTCAATGACGCATCTTTGCTCTCTCTTTCCCCTGCCCTAG
Seq C2 exon
GTCCACTATGACTTTGGACTGAGAAATATCCTGTCTGTGCTGAGGACCCTTGGGTCTCAGAAAAGAGCTCGGCCAGAAGACAGTGAGTTAAGCACGGTCATGAGAGGGCTACGAGACATGAACCTTTCTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGCTTTCTTGAAAATGT
R:
TTAGAAAGGTTCATGTCTCGTAGCC
Band lengths:
214-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: