RnoINT0049193 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9423456-9424883:+
Coord C1 exon
chr20:9423456-9423563
Coord A exon
chr20:9423564-9424748
Coord C2 exon
chr20:9424749-9424883
Length
1185 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCCTCTCCCCCTGTCCTAGGTC
3' ss Score
10.59
Exon sequences
Seq C1 exon
ATCATCATGCGAGTTAAGCTGGCAAGCTGTGGCTTCCTTGAAAATGTTATCTTGGCGCAAAAGTTTTACGTTCTCTATAAACTCTGCGAAGAGCAGCTCACGAAACAG
Seq A exon
GTAAGAGTGCATATTTATTCTCCTTGTATAGAATTTAGGTCTTCGTTTCAATTTCTCTTAAAAAAAAAAATCGTGCGTAAGCTCGTGTGGGCCTGTGTCTGTGAGTGCAGTACCCACAGGGTCAAGAGGAAGGCATCCGATTCATCCGAGTCAGACTTGCAGCTGATTGGTGGGCAGCTGCCGCGGATGTGTCCCCGGAACTGAACTCCGGTCCTGGGGCGGAACTTGGGTCCTCCCCAAGGGCACTGCACCCTCTCAACCCCTGAACTGCCTTTCCAGCTCCTGAGTCTAGGTTTTAACTTTGCTGTTTTACCTCGATAGATGCTAGTCAGCGAGATTAACCGAACGCCAGGAGCCACTCCTAAATAAACGCACGGTGAACTCGACTCACTGGGTACCTGTTTTAAAATGTTTTAATACAGGGATACTTGGAGGTTCTCAGGAACTGGGGGGTGGGGGGATGCCCAGGAAGTTTAATTGTTGTAGATATAAATAGACAAGTCCCTGTATCACAAGATAAATGATTCTCTTTCTTGTGGGTATTTAAAAAAAAGATTTTTAGATTAATTATGTGTGTCTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATGTGTGTACCCTTCACCCGCTCCCTCCAGTATTGACATCTTTTAGCTAGAGAATAGCAATACAACTCAAGAGCTTTGTCAATTGTACGTGCTCTCCTAGTGTGTGTGCGCGTGTGTGTTTATATCACGCGTGAAGATTAATGTAGCCCCCACCACAGTCAACACCGCACTTACATACTACAAGGTTCCCTTCCGCCACGCCTTTGCACTCTCGTCTTTCCCTCTCCCAAATGGCTCTGCTGTCAAAGCCACCCGTCCTTCGCTCTGTCCGAGACATTAGTTCAAGGATGCCTCATAAATGGAATTGTCAACGGGTAACTTACAGGCTCTGCGTTTAAAATCTATTGCCTGCCCCTCAGACTGCACCCAGCCATCTTATTCTGAGGTTTGAATCCTGTAATGTCACCCGGCTGTTTTTTTGTTTTTTTCCTGACAGAACGATCCCTTTCCTCACTCAAAGGGAAGGAAGACGAATGGAGCTTTCAACACGTCCCAGCGTGGCCATTCCACAACACCAGCCTGGACGTTTTCAGTGACGTATCTTTGCTCCCTCTCCCCCTGTCCTAG
Seq C2 exon
GTCCACTATGACTTCGGACTGAGAAATATCCTGTCTGTATTGAGGACCCTTGGATCTCAGAAAAGAGCACGGCCAGAAGACAGTGAGCTAAGCACGGTCATGAGAGGACTACGAGACATGAACCTTTCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATGCGAGTTAAGCTGG
R:
AGTTTGGAAAGGTTCATGTCTCGT
Band lengths:
241-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]