GgaINT0087324 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30669596-30670593:-
Coord C1 exon
chr3:30670486-30670593
Coord A exon
chr3:30669731-30670485
Coord C2 exon
chr3:30669596-30669730
Length
755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTATTTTCACATTCTACTAGGTT
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATAATTATAAGAGTTAAGCTTGCAAGTTATGGATTTATTGATAATGTGGTTTTGTCTCAGAAGTTCTTCGTTCTTTATAAACTTTGTGAGGAGCAGCTCACTAAGCAG
Seq A exon
GTAATGTTATACGTTCTCTTCTCCTTTGTCTTAGTATTTACGCAGTGCAACCCTTTAGATTTTGATTTGTACAGGTTGTTTCTGAACAATCACTTTTATGTTTTTAATATTGGAGTAGTTGAAATATAATTGAAGCATTTTTCTTTTAACATTTTTGAACCATGTAAGTTCATGCATGTGTAGATACATTAATTGTTAAAAAATTATGATTTGTAGTTGCCCATTTATGAAGTTCTCTGCCTAAACGTGGTAGGCAGGGAAAATTAACCTTGTGTCTCATTTTTCTGTAGTGCTTAGTGAAGTCAAGAGAAAGCATCTGTAGCTTCAAAACTGCAGGAGGAATGTCTTAAGTTTGATTTAAGTCACAGCACTTCTTTGAATTTCACAGCAGTTTGTTCTGAAGCCTTGGGTTTAAGCTGCCTTAGTTGGGAATGTCCAGGGTAGAATGCAAATATTGTTTTTTTAGAACACCAATGTAGAGAGCTACAAAATAGTTGCTATATCAGTTCATAAATGATGAAGTCAATGAAATCCAAACTAGAAAGCTTATACCCTCCTTCCTGAAAATAAACTGCTTATCTGTTATTTATTTTAATAGAAAACTTCCTAAAGAACCACGACAGTTCCAAATTCAGTTAACTTTTCCAGGCAAGGCGACTATACTATAGAACAGACAAGTAAGATTTGCTATTCTAATGAAATAAAGATAGAGAACTTGTTACTGATGCATACACTGTATTTTCACATTCTACTAG
Seq C2 exon
GTTCATTATGACTTTGGTCTGAGGAACATCCTTTCAGTACTTAGGACTCTTGGAACTCAAAAAAGGGCCAGACCAAATGATAGTGAATTAAGCATTGTTATGAGGGGACTAAGAGATATGAATCTTTCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAGTTAAGCTTGCAAGTTATGGA
R:
TGAAAGATTCATATCTCTTAGTCCCC
Band lengths:
230-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]