BtaINT0050783 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31007684-31009899:+
Coord C1 exon
chr19:31007684-31007810
Coord A exon
chr19:31007811-31009643
Coord C2 exon
chr19:31009644-31009899
Length
1833 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATGTCGACTCTTTCCTCCAGCTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTATGAAACAAGACTTTATGGGGACTGGTGTCAAACAGTAGCAGAGAAGTCCCAGTACAACCTTTCACGGCCACTTCTGAGACGTGACCCGGAGACAAAGCAGATCACTGTCAACTTTAGTCCACAG
Seq A exon
GTAAGTCGATGGAAGGAACTTCCTTTTGTTCTCTAAGAGTTGCATTTTTGACTCTGCTGATTTCAAAGGCCAACAGGCTGGCTTTTTATAAGAATATGCAAAAGGTGGTCCAAAGAACTTGCACCCTGCATTTCATTTTTGGGAGGAGTGAATCCTAGGGTGTAGTGTTTTCTTAAGATGTCTACTCTTCATGTTTTCCTCCAGGGTCCCCCAGTGAATTTGCTCTGATGTCACACAACAGAAAGTACTGCAAAATACCACTGATCTTTTGGTATCAGAGTCAACTGGGCCCACCTTATCTTTTATTTTGTGGTTGTACATTTGAAACGGCCCTCTCTACTGCCATATTATATAAACAGTCCACGCTTTTATTCTTTTTTTTTTTCATTTTTTACATTTAAAATTTTAATATCTATCTTGAGCTTATTTCAGTATAAACTAGGAGGCTGAGGTCATTTCCCGGCTAAAGGATGAGCCTTTGTCTCAGTGTTGTCAGGACAGCAATGAGAGCTGACCCAGAACCACTGGAAGGAGAACTGGGAGCCCAGGAGTCTTGATATGGAGGTGGGGCTGGGGCTGGGGGGAATCTGGCTAGCTCTGTGTTTTGTCATCTGTCCTTATATGTATCAATCCTCAATCAACTCCGAGATAACACAATAAATTAGCAAGGGATGAAGAATGGGATGTCTGGAAACCCTGCTGGAGGCCTCTGTCTTTTGCACGGGACCACATCAGCTTGGCTTTTCCCTTCTGCACTTCCCACTAAACTCAATGCCTCCCCTCAAGAAGTTCAGAGAGGCCTGTGTGACATCTATTTCCTGACCCCCTAGTATATTAAGCCTTTAGAATAAGGCTTCCCTGGTGGCTCAGATGGTCAAGAATTCACCTGCAATGTGGGAGACCCAAGTTTGATCTCTGGGTCAGGAAGATCCCCTGGAGTAGGAAATGGCAAACCCACTCCAGTATTCTTCCCTGGAGAATTCCATGGACAGAAGAGCCTGGTGGGCTACAATCCGTGGGGTCGCAAAACAGTCAGACGTGACTGAGCAGCCCTCGCTTTCACTTTAGTATATTAAAGCACAAAGCATGCCAGGAAAGAGTTACAGAAACTAAGGGATATTTCCAATAATTATATTTCACAACTAAAGTTGTAAAACGTGCACCTCCTCTCAACTCTGCCAGTGTCTGTGACCTTGTGGGGAGGGGGCAGATGGTCTTCATGCATGTGGGTGATCCTAGTCCTTCCCCTGACCACCCCCCAGCCCCCAACCCCCGCCACAGAGCATGGCTCCGCAACCAGGGACCGACTGTTCTCATCATGGAAAGTGATAATTGCTCAGTTGAGTCTGACTGTTTGCAACCCATGGGACTATAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGAAGTGGGTTGCCATGCCCTTCTCCAGGAGATCTTCCTGGCTCAAGCATCAAACCCAGTTCTCATGCATTGCAGGCAGATTCTTTACTGTTGGAGCCACCGTGGAAGCCCCTGTTTTCATCATCCACATGCCCAAAAGCATCAAGCTAGAGCCCTCCTTGGCTATGGCTGGCGTCTTCTTTCTCAGGTTTTCCTCTTCTTACTCTTTGTAATTTACAGATTCGGTAAGTCTTAGTGCTTCCTGATCATCTTCCTTTTGCCTAATACTCAATTTTCCCTTGCAGAGAAGATTTAAGGAACTAGTAGAAGTAAAAAAGAGACCCAGAAGGCCCTCTGGGGTTTCCCGGTCCTGACTATGTTGCTGCTATTCGATACCACTGAACCGCAGGAACTCATGTCGACTCTTTCCTCCAG
Seq C2 exon
CTGGTCTCCGTGCTGAAAGAAATGAGTTATCTTCAACCCCAGCAAATGACGCACATCCCCGAGACAGCAGCAGCCATGTTCTCCTCCAGAGAGTTCTACCGGCAGCTCGTGGCTAATTTGGAGTTGACGGCAACTTGGTACAACAAGGTTATGAAAACTCTGCTCGAGGTGGAATTTCCATTAGTTCAGGAAGAGCTGCAAGATATCGATCTTTGCCTGAGAGTTGCAGAGGAGACTCTGAACTGGAAGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACTGGTGTCAAACAGT
R:
TCCTCTGCAACTCTCAGGCAA
Band lengths:
342-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development