DreINT0058269 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:184703-185157:-
Coord C1 exon
chr12:185031-185157
Coord A exon
chr12:184959-185030
Coord C2 exon
chr12:184703-184958
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TCTCTGATCTGCTCCTGTAGCTG
3' ss Score
8.47
Exon sequences
Seq C1 exon
ATACTCATCTAAACTGTATGACATCTGGACCAGCTCTGTGGCCGAGAAGTCGCAGTTTAATCTGAACAAGCCGCTGATATCCCGAGAGCCCAGATCCAGACTGCTCTCTGTCAACTTCAGCCCGCAG
Seq A exon
GTCAGCCTTCTGCTTCTGATAGCATGTTAATGTTGTGTGGATGTGCGCTGAGTCTCTGATCTGCTCCTGTAG
Seq C2 exon
CTGGTGTCGGTGCTCCGGGAGGTGAAGTACCTGGAGGCCAGACAGGCTGAGATCATCCCCGATGCAGCCGCAGAGATCTACTCCAGCAGAGAGCTCCTGTGGCAGTATGTGGCCAACCTGGAGCTCACCACCGGCTGGTACAACAAGATCATCAGCTCCGTGCTGGACGTGGAGATGCCACTGGTCCAGGGCCAGCTGACCGACATCGACAACAAGCTCAAAGGAGCCCAGGAGAACCTGTGCTGGATAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGAGAAGTCGCAGTTTAA
R:
CTGGAGTAGATCTCTGCGGCT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]