GgaINT0127342 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1046969-1049233:+
Coord C1 exon
chr18:1046969-1047095
Coord A exon
chr18:1047096-1048977
Coord C2 exon
chr18:1048978-1049233
Length
1882 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTCTGCCTTGGTTCTCCAGTTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTATCAAGAAAAACTGTACATAAACTGGTCCCAGACAGTCTCTGAAAAGTCACAGTACAACCTCACTCAACCACTCATCCGGCGAGAGCCAGAAACCAAACTGCTCACGGTCAATTTTGATCCCCAG
Seq A exon
GTAAAAACTACTGCCTGCTGCCTTTCCTGCCTGCCTGCAGGTGTCTCTTCCTGCTGGGCTTTTTATTTTTTTCTCAGTGGGCTCCACTATGGGAAGGTGATTGAGTGGGTTTGGTACTGGATCTGTTCTGCTGACATCTGTGGATCCCCTTCTATAATGAGTAACGTAAGTGTAGCACTCTCTGTTGCCTCTGTCTCCTGAGAAAATAACAGGATTGAGGTTTAAGCAGAGCAAATTCTAGTGAAAATCAGTTATGGGAAGTAGCAGGGTACACAGATGCTTAAGTGGTGTCAGCATCTCCAGATTAGACTTGGTACTGGTGTGGAGCACTGGAGCTTGAGCTGCAGAGTTTGGTTCATGTCCCAGAAGGGTATAGTATAACCCTGGAAAGGTTTATTTTGTTACAATAGTATTGTGGCTGTTAGATTCTTCTACTGAACTGCATGAGGCTTAGAACAGATTTAGGGTCTTTTTCCTGTACCCTAAGATTTCCTCTAAAGCCTGTCTTGAGCACAGTGAGGATGGACCGTCCACCTTGCCCAAGGTAGAATCTGGGCTCCAAACCATCAGAGTGTGTAGACTTCCTGGGGCCTGGTGGGAGCCAGTAACTGGGAAATGTAAAAGTGCCATTTAATGGGAGAAACAAACTCTCAGGGTCATGGGGCACATTGGCACCAAAACCTTCCCACTTTCCTGGGGTATGCTGCAGTTTTAGTGTTCAGGTTTTCAGTGTTTAGATTTTACAGCTCATTCAAACTTGGCCCTCAGTCAAAGGATTTGTTTGTCTCCTTGGAACCTCCTTTCTAAGTTGGGAGCCAAGTGGTTTTGGGATATTTTTTACCCTTCACCTTCGGGAGAGGGTTTGGAGCCTGTGATGTGCTGAGCATGCCTGCTCCCAGCTCTTGTGCCAGCCTTCAAGTGCTGCTGCTCTTCTCTTCTTTGCTTCCCACAATGAGGACAGTCTGATGTCCCTGGATGCCAGTTAAGCTCCTTCATTCCCTCCAGAGTTGATGGGAGCACTTCACTTTGCCTCAAGGGATGTATTTGCAACCCTCCAGCATGGAAGAGTCTTCCAGAACTCACCTTTCATGGAAGAAGGGGAAAGGAGGACTGTATTTTCAACCCCATGTTGGGCACATCCCATACCTTCCACTACAAAGAAGAGGGAAGGGGAACTTGTTTGTATCTCATGTGCCCTCTTGTTTCTTCAGCTCTCCCAACATGTGCAGTTCCTGGAGCACTTTACCATGCTAGCTACTAAATGCAATGAAGATTTTTAGTCTTAAAAGTCATATATTATGCTGGAAGACCTTACTGTTCCCTTTGTTACAGGCTTGCATTTATATTGGGTTTATAATTGAATAAAACTCATTAATCCAACCAGTCATTGCTCAGACTGGGGCAGGGAGAGGTATCCAGCAGAAGGCTTTGCTGGTAGGTAGGCACACTGAAATGGGAGGATTTGACTCGTAAGGTTTGGGCCCTGGTGTTTGTTTTTTATGTCAGTCATCTCCAGTGGACCAACAGAACTGGTCCATCTTTCCCTTAGATAACTGTTTGCTAAGCTCTCAGACAAGATTATTGCTAAAAAAGTATTGGTGAGGATGGCTAAGAGAACCAGAGTTCGTTGTGGCTTTTAAAGGCTGCATGGAGTTTACTTGCTTGGTAGTTACCAGAGCTGTCAGTCTTTGATTGGAAAGAGAACGGGTGACAGAGGTCAGTGGAAGACAGTACAGACTGAGAAGTGTCTAGGTGCTTTTCAGAGCATGCTGATTTATCAGCAGAATAGTAGGAAAACCCTAAAATGTTCATAAATTGGAGAGTGTATGCTGGGGAAATGGAGAGATTGCTCTGTGTTCAGCTCTCTGCCTTGGTTCTCCAG
Seq C2 exon
TTGGTTTCAGTGCTGAGAGAGGTGAGCTACTTGTCTGGCAGCCAGATGGGAAGCATCCCACCAACAGCAGCAGAGATCTATTCCTCCAAGGAATCGTACCGACAGATGGTGGCTAATTTGGAGCTCATGGTGAACAGATACAACAAGATCCTGAAGACAGTCCTGGAGGTTGAATACCCTCTAATACAGGAGCAGCTGCGGGATATTGACTTGAAGCTGAAAGAGGCAGAGGAAACATTGAACTGGAAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(22.3=100)
A:
NA
C2:
PF083857=DHC_N1=FE(45.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGTCCCAGACAGTCTCT
R:
TGTTTCCTCTGCCTCTTTCAGC
Band lengths:
342-2224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]