HsaINT0050046 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11550389-11554641:+
Coord C1 exon
chr17:11550389-11550515
Coord A exon
chr17:11550516-11554385
Coord C2 exon
chr17:11554386-11554641
Length
3870 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTGTTGCTTCTTTTCTCCAGCTG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTATGAGACAAGACTTTATGAGGATTGGTGCCGGACAGTATCAGAGAAGTCACAGTACAATCTTTCCCAACCACTTCTAAAACGTGACCCAGAGACGAAGGAGATCACTATCAACTTTAACCCACAG
Seq A exon
GTCAGTTGGCTGACAGTAGCTCTCTTTTGGGTTCCTGAAGAGTTTCTTTGAACTCTGCTGATTTCAAAAGCGTAAAGACTTTTATTTTTTTGAGACGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTACAACCCCTACCTCCTGGGTTCAAGTGATTCTCCTACCTCAGCCTCCCAGCACAAAGACTTTTTATAAGAACATGCAAAAGATTCTCAAAATAATTTGTACCCTGGATTTCTTTTTTGGGATGAATTCTGGGGTGTAGTGTTTTATTAAGTTGTCCATGTTCACATTTTTCACTAGGGTTGCTCAATATATTTGCTTCAATTTTGCACAACAGGAAGTACTACAAAAGATCACCAATCATTTGGTAACAAACATAGCCCACTGGGCCTACCTTGAACTTACCATGTCTGAAGGCCATTGACTAGATGCTGGAGGGCCAACCAAGTGCATATAAGACTTGGCTCCTGCCCTCAAGGAACCCACGGTCTAGTTGGGGGTCACAACCTTAACATGCAAAATTTTATCTTCACTAGATGGCATATGGTAAATCCCAGAGGAGTGGCTTTGGAAATAAGACTCTAGATTAGTGGTTCTCAACTGGTGGTGATTTTGTCCTCCTGGAAACATTTTTGTTTGTCAAACTAGGCGGGAGTGCCAATGGCATTTAGTGGATAGATAGCAGGGATACTGCTAAACTTCTTGCAATGCACAGGACTGTGTACCACCACAGAGTTACTTGTCAAAAATGTGAATAGTGCTGAGGTTGAGAAACTGTTTTAGATGATCAGAAGGATGGAAGACCAGTGGGGACCGTAGCAGCCACAGAAAGTTTAATGCTGGAGAAAAATGATAACTAAAGGTTAGTTGGTTTCAAAAATAATATTACTCAGGTTGAAAAAAACTGTATTGGTCACACTAAGCTAAAAGCAGTCACCTACATCTGCCTTGATGGCGTATGCTCCAGGAATGCACTATAGATTGAGCTGAAAACCAAGCTGATAGCATATTGGTGTCTTTCAAGAAAATTGCAATTTAAGTAGAACATTGCTTCCTCCTCTGCAATCAAAGTCAACAAGGAATATAGAGAATTCATGTCTTCACTTTGGCAAGACGTGAGTCTGTTTAACTTACTGAACTCCTTGGATCAATTTCATTGGCATTCACTGTGAGCAATATTGAATATTAAATGCCTAAAGAGATGAATATCTGGATTACCAAGTAGGCCACAGTTTCCATGTTGTAATATAGTAATTAAGCCCTTGAGATAAGTCCTCAGTATAAGATATATTACTATATAGTAATTAAGTCCTTGGTATATAACCATACTTGGTCATGTATTGAAGATGGACCAGCCTCTGTATACTCCAAGGACAAGGACCTTATCTGCCTTAATGTGTAACACATAGGGCACACTTTATAGATGTTTGCAGGCCATAGAAGGGAAAGGAGGGAGGAAAGAAGAAAAAGGGGGGTAGGGATAAATATTAATACCTAAACTATAATGTGAGTTGATGGGGGACAACTACAAGCTTAACAAGTCAAAGAAGAACACCATCACACCTTGACATACAACTTCAAGCAATGTGGCCAAAGCTGGGCTATTAAGAATGAACAGGGCCGGGCGTGGTGGCTCACACCTATAATCCCAGGACTTTGGGAGGCTGAGGTGAGTGGATCACCTGAGGTCAGGAGTTCAAGACGAGCCTGACTGACATGGAGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTAGGAGGCAGTGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTAGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAGAATGAACAGTAACACACTTATCTTATTAGTCTAGAGGGACATGATCAGAAATTTGCCCCTCTGGGGACAGGATAAGAATTGTATAGGTTAAGTTTTTCAAATTTATGTAAATCATTTAAATTATTTAAATGTCTTATTGTTGGGCATTTACATCATTTTACAGTTTCATCAGTCTATATTTCATTGATTCTAGGAGGCATCTTTTTACATATTTATATCTCTGAAATTGGCATGTTTTTAGTTTAATAGACTGCATGTTTTTGTTTTTTCTTTTGTTGCGTATAAAATAATAGTGAATCTTACAATTGATGACATCTTAAACTGGATAAAGCATGGTATAAATAATGCTACAACAAATATCCCTAGTTTTGATTGTATGCATTCCTGATTATTTCTTTAGGATAAAAGTCCAGAAATGGAATTTCTGGGCTAACGGGCATTCACATTTTGAGACTTTTCATGTATATTATCAACTTGTTCTTTAGAAAGATGAAACTCAGTCATTTTCCTGCCAACAAGATACTGTTCATTTCTTCAAATAGTTTCCAGACTGTTGAACTAAAAGAAAAAAACTCAATGTTGTTCAATTTGCATGTATTTGATTACTAGTAAATGTGAATTTTTATCATATATTCATTACTCATGTATATTTATTCTTCTTTGAATTGCTTGTTCATGTCCTTTGCCCACTTGCTAGTGGAAGTACCCTCTCTTCCTGTGAATTTGTTAGGATACTTAGGAAATATGTGACAGATACTAAGAAATCTGCTCCAAAAATTTTGCCAGTTTAAATGGCCAAATATGTTGGCCATTTTATGTTGATATTTTATGCGCAAAAGTTTTTATGTTTTGTGGTTTTATGTTTGGAATGACTTTCTCTACTTCCCTATTATATTAATAGCCCCACATCTTTCTTTTAATTATTTTCTTTTCACTTTTTACAGTTAAATTATTAATATCTATCTTGAGCTAGAACTAGAAGACTGAGTCCATTTCCCCACAAAATGGTTAGCATTTGTCTGAATGCTGAGTAGGGTTTGCCCACTAGCAATAAAGAATTGACCCAGAGTACTGGAAGGAGAGCTAGGAGCCAGGTGTCTTCATATGAGGGGGAGATAGGGAGAACCTGGGGCCATCTGTTCATCACTTGTACCTATGCCCATCAGTCCTCATGGGTTCAGACAGAAACATCAATAAATAAGGAAGGATGAAGAAGAGAGTGCCTGGAAACCCTGTTTCATTGGACAAATCTTTCTCCTTGGCTTCTCACTTCTTCAGTTGCTGCTGAATTTGGGACCCCACAGAAGTTCAACGCAGCCTGGATGAGTTCCATTTCCTGAACCCCTAGCATGTTAAGACACAAGGAAATGCCAGCAGAGAGTTACAGAAGTTGTGGGATATTCCAAATGATTACATTGAATAACTAAAGTTTTATTATGGGCACCTCCTCTCAATCCTGCCAGTGTCTCGCTATAACTGTTTCATTTGGAGAGAATGCCAGAAGTCTGAACTTGAGGCTTCTCATGAATGTTGGTAGCCCAGGCCAGATGATTCTCCTCCTTTAGGCCACCACCCTTGGATGGGAACTGGCTGGGCCCCTATGAGCCCATCATTTCCGCAGCCACATTGTCCAAAGCACAGAAGGCAGAGCCCTCCCCTGCTATCACACTTGTCTCTGTTCTCAGGTTTTCCTCTTCTTTATGATGTATAGATTTAGGAGCCTTGTTTCTTTCCGAGACATCTTCCTTCTGCCTGATACTTGATTTTCCTTTTCTGAGACTAGATTTAAGAAACTGATAGGAGCAGAACTTAAGAAAAGACCCAGAAGATCTTTGGGCCTCCTGGGATTGTCCAGTCTTTGACCAATGCTGCAGATTATTCATTATCACTGAACGACAGACACTTGTGTTGCTTCTTTTCTCCAG
Seq C2 exon
CTGATTTCAGTGCTGAAAGAAATGAGCTATCTTGAACCCAGAGAGATGAAACACATGCCTGAGACAGCAGCAGCCATGTTCTCCTCCAGGGATTTCTATCGGCAGCTTGTGGCTAATTTAGAGTTGATGGCAAATTGGTACAACAAGGTTATGAAAACTCTGCTGGAGGTGGAATTTCCATTAGTGGAGGAAGAGCTGCAAAATATTGATCTCCGCCTCAGAGCAGCAGAGGAGACTTTGAACTGGAAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)