BtaINT0050793 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31046964-31047558:+
Coord C1 exon
chr19:31046964-31047094
Coord A exon
chr19:31047095-31047431
Coord C2 exon
chr19:31047432-31047558
Length
337 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GAAATTCTTTGTGCCCTCAGGCT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GATTCTAAAAGATTTGAAGGCATCGACATAGACTTTAAAGAGTTAGCTTATGATGCTCGGAAAACGCCAAATGTAGTGGAAGCCACCAACAAGCCAGGTCTTTACGAAAAGCTGGAAGATATTCAGAGCAG
Seq A exon
GTGATGGCCGGTGTGCAGTTGCCTTTGTAATGGAGAGGCTTTGTCTCTCTTTGTCTCTCAAGTCCTTACCTTAGTTAACTGCCCGAGTGAGAGAGTGAACATGTGTATCTGGTCGGGTACCTTGATTTGCCTGTGTGCTTGGGTAACATGGGATATTGTTAGAGGTGTTTATTCTGATTGAAATGTACTAGTAGGGCTATATGCACATGCCCACAGATGTTCCATGTATACATCACTCCTGAGGATAATCCACAAGTCACACTCGTTTGCATTTAGGTAACAGCCACATGCCTCTGGATCCTGGCAAACCTAACAAGGAAATTCTTTGTGCCCTCAG
Seq C2 exon
GCTGTGCCTGTGTGAGAAGGCCCTGGTGGAGTACCTGGACACAAAAAGGCTTGCCTTCCCCAGGTTTTACTTCCTCTCCTCTTCTGATCTTCTAGACATTCTTTCCAATGGCACAGCCCCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAAAGATTTGAAGGCATCGACA
R:
GCTGTGCCATTGGAAAGAATGT
Band lengths:
246-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development