GgaINT0127352 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1060905-1062277:+
Coord C1 exon
chr18:1060905-1061035
Coord A exon
chr18:1061036-1062150
Coord C2 exon
chr18:1062151-1062277
Length
1115 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CATTCACTTTGTTTCTCCAGGCT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GACTCCAAACGCTTTGAAGGCATTGATGTTGATTTTAAGCAACTGGCTTATGAAGCTCGGGAAACCCCAAATGTAGTTGAAGCCACCAATAAACCAGGCCTTCCCCAACAACTGGAGAACATTCAGAGTAG
Seq A exon
GTAGGTGGAACTTCAGTCCCTGGATTTTGGCAGAGGCTGGGATCAGTTGTAATAAGTTAGCATAACCTGTACTCTGGGGCTTTCTTTTTAAGACTGCAGGGTTGTTTGCATTCACAAGTTGCAGCACGTCTGATCTTTCTTGAGTCCTTTTATTTGTGATCCATCACCTTGAAGCCCCCAAAGTGCAGTCTGGCTTTGTGTAGGTGCAAATTCTCATCCTGCCTATCGATTTGCACATGTACAAAAGTAGGCATTCAGCAGGTTTGAGGAACACGTGGCCTTACTGCCACCCTAAATACAACATCTTAAAGGTCTGTTTAGCAGTCCAGGCAGGAATATCTGCAGCAGAGCTGAGCCCATGTTCTTTAATTTACAATATTATCTCTGCATATATACCCTTGGCATATGGAAGATCTGGGCTGCCTGGGAAAGACCTTACTGTCCTGAGATGGATACACTTCTCACTTAACATATGAGCTTGCCTGCCTGGAACACACTGAAAGCTTAATATGATAGCTTTTTTGTCAGTAATAACTATCCTCTTAAAATAAAGTGGTTTTTTTTAATATACATATTAGGTAAAGCCAGTGTTGCTCACAGAGGACTAGCTGCATGTTATTTATGAAGTTTGTAAGCTCAGCAGCAGTTTAATGTGTAAACACTGAAAGATTTATTTTAGATTGGAGCAAACAAATTTCCCTTCAGGCTTCACAAACACAAAGAGCTGACTAGGTTTGAATAAGACTTTAAAATACAGCTTGTTAAAATAAAAGCAGTTATAGAAACTTTCATCCCAGTGTGAAATCACCTGTGAAAATTATGAACTTGTCTAAAACAGCAAGTCAGACTGCAAATGCTTTCCAGCTTCTTCCACTTCTGGTTTTGCTTTTTCATGAGGCTCCTGGGCTATTTGGCCCTTGGGGATACAGGGAGACCCGTGAGTTACTACATGCTATGCTGCCCTATTCAGTGAATGCTGTTGAGGACCACACCGTAGGCCCAGCTCATGCCTGACACTCTCCCATGGCAAAGGAGAATCTGCCCAACTGCAGCATGGAGCATGAGGGGATATTCTTCTGCCTGTCCTGTGCTGTTCATTCACTTTGTTTCTCCAG
Seq C2 exon
GCTGTCACTGTGTGAGAAGGCTTTGGCTGAATATTTGGACAGGAAGAGGTTGGCCTTTCCCAGATTTTACTTCATTTCTTCTGCAGATTTATTGGATATTCTTTCCAATGGCACCAACCCACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAAACGCTTTGAAGGCA
R:
CTGTGGGTTGGTGCCATTGG
Band lengths:
254-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]