RnoINT0049246 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52600383-52601292:-
Coord C1 exon
chr10:52601162-52601292
Coord A exon
chr10:52600510-52601161
Coord C2 exon
chr10:52600383-52600509
Length
652 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGTGCTCTGTGCTCTCAGGTT
3' ss Score
10.79
Exon sequences
Seq C1 exon
GACGCTAAGAGATTTGAAAGCATTGACTCTGACTTCAGAGAGCTGGTGTATGATGCTCAGAAAACCCCAAATGTGGTCGAAGCCACAAATAAGTCAGGTCTCTATGAAAAACTGGAAGATATTCAGAGCAG
Seq A exon
GTGGGTCCGCTCACTGCCCCTGCTGTGAGGAGGAAACAAACTTTCCTTTTCTGTCTCTGACCTTTATTATCTGCCTGCCAATGACAGCATGCTTGGCCCTTGCTTTGCCTACAGGTTTGGGCAACACAGGGCGTGGTATCCTTACGGGAGTTGATATATGTGTCAACAGATGTGTGCATTTGCGAATATCCCTAGGTATTCTTTATTCTTCTGTTTGTTTATATCTTACATATCGCAAACATAGTTGTCCTTCAGTTTCCACTCAGCATTGCTTCCAAGACAGCCTGCAGATATTCAGAAGTCTGGGCAAGTTCCTTATGCAAAATATAATTGTATATAACCTGTATAGCCCTCCCATGGGTTGTACCGCCCTCTGGTCTATTTATAATACCTAGCGCAATATAAATGCTTTGTAATGGCTATGTTGTATTGTTTAGGGATTAAGAACTAAAAATGTTTGGATGCATTAAAAAGAAAAAAAACACGTGAAGAGATTTTCTGAGCATTTTCAATTTTCAACCTGAAGGTGGTTGGACCCTCAGAAGAGGAATTTCCAGACGCTAAGGGCTGACTTTATTTGCATTTAGGTAATGCACGTGCAGCCTGGGAATAAGCATACTAAACTGTAAGAACCTGTGCTCTGTGCTCTCAG
Seq C2 exon
GTTGTGCCTGTGTGAGAAAGCCCTTGCAGAGTACCTAGACACCAAGAGACTCGCCTTCCCTCGCTTTTACTTCCTGTCCTCCTCTGACCTGCTAGACATCCTTTCCAATGGCACAGCCCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTAAGAGATTTGAAAGCA
R:
GCTGTGCCATTGGAAAGGATG
Band lengths:
248-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]