DreINT0058280 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:176595-177288:-
Coord C1 exon
chr12:177158-177288
Coord A exon
chr12:176722-177157
Coord C2 exon
chr12:176595-176721
Length
436 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGTTCCTGCTGTTCCTGCAGGCT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACTCCAAGCGCTTCGAAGGGATTGATGGAGATTTCAGAGAACTGACGCTCGATGCCAGACAAACACCCAACGTTGTGGAGGCCACCAATAAACCAGGCCTGTACAGCAAGCTGGAGGACATCCAGAGCAG
Seq A exon
GTGTGCAGATATCTGTGTGTTTGATTATCTCACCGTCCTCTCAGGTGCAGGACAAATGAACAGCTCACATCTATGGTCTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACATATGCTGGAATAGTCGGCAGTTCATTCCGCTGTGGTGACCCCTGATTAACAAAGGGACTGAGCTGAAGGAGAATGAATGAGTGAAGAACTTCCTCAGATTTCAACTGTGCTTTATGACACACACACACACACACACACACACACACACACACACACACACAGATGATATCTCATTTACACTCATGAATATTCATCAATGAGGCTGAACTTTAAGAAAAGTTAACTTTCAGAACGCTCCTTCAGGAAGCACATGTGAGCGTTAGCGTGTCCCATGATGCTCTGCTGTGATGTGTTCCTGCTGTTCCTGCAG
Seq C2 exon
GCTGGCCCTCTGTGAGAAAGCTCTGTCTGAATATCTGGACACCAAACGCTTGGCCTTCCCTCGCTTCTACTTCATCTCCTCCGCTGACCTGCTCGACATCCTGTCCAGCGGCACCGACCCGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAAGCGCTTCGAAGG
R:
GGTGCCGCTGGACAGGAT
Band lengths:
246-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]