BtaINT0050846 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31228729-31230407:+
Coord C1 exon
chr19:31228729-31228920
Coord A exon
chr19:31228921-31230215
Coord C2 exon
chr19:31230216-31230407
Length
1295 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTCCTCCCTTCCTGTCTCAGGTC
3' ss Score
11.98
Exon sequences
Seq C1 exon
GACACCCTGGAGATGTGTTCCCGGGAGACGGAGTTTAAGAGCATCCTCTTTGCGCTTTGTTACTTTCACGCTGTGGTGGCAGAAAGACGGAAGTTTGGGCCCCAGGGGTGGAATCGCTCCTACCCCTTCAACACCGGGGACCTCACCATCTCTGTGAACGTACTCTACAACTTCCTGGAGGCCAACCCCAAG
Seq A exon
GTACGGCAGGTCGGGAGGGCGCCTCTGAGAAAGATGATGGGGCATCAGCATGGGGAGATGGGGTGTGCTCACTGGCGCAGGTCTACAGCCCCCCAGGGGGCATGAGGAAGTGCAGGTTTACTGCAGGGTCAACCCCAAGAGCAGCGTGAGGCCGAGGAGGAAGTACCATGAAGGGAGAGGGGTGTGGTGAGAGTAGTGAGAAAGCTCAGGAAACCAAACTATTAACAGTGACTCACACTTGGTGTCAGTCAGTCCCATGGGTGTCTGTCCCAGCCCCCTTGTGTACTCCCAGCATTGCTGGGGGTGGTGATTGGCAGAAAGAGACCCACTCTCATATGCTACAAGCTCCCAATTTAATTCACCAAAGACAGAGACCTTCTTGTGGTGGTGCACACAGTTCCTCGCATAAGCACCGTCTTAAGCATGGTCTTGCTGAAGTTGAAGAAGCCAAATGCTTCCTTCTTCCTTCACCTCGCCTCCTTTGTCCCGCCTGATGGCTCCATTTTATGAGACACTGACACCGATGATCCACGCTCTTCAGTTTAGGGAAGACCAAACAGCCTCTGCAAGGCCTCTCCCTCTTTCTCTGGGGACAGTGAATCAGGCCCAGAAGCAATGCCCTGGCTCTGGCTCCAGGGTCCTGGGAAGTCCACCACAGAACACACCATCCCTTCACCTGCCTCGAGGACCCAGGCTTCCAAGTGGCTTTCCTGCCTAACGCTAACATTCATGAACTCGTGTGCTGTATTTCACTCACTCTGAACTGTCCAAGGAGACGATTAATCAATAAGCTAACTAACGGCAGCGAATGAGAAAAGTACCCACGTCTTTGCTCTCCTCTACTTGAGCTTGGCAGGTTTAAAGGACCCGTAGGTAGAGCCTGACTTCACTGCCACAGTTAATGACTGTGAACGAGGGCAGGCGTGTGTGCAAGAGTGCCTGTGTCTTACCTCTTCTCACCCTTTGATCTAACTCTTCCCTCGTTTAATGAGCTCCCAGAGGTGCTCGCTCCCAGAGGTGCTCGACCTTGCTGGGTACCAGGGAAACACGGATGAATAAGACACTGCTCCTGGGACTTCCCTGGTGGTCCGGTGGTTAAGACTCCATGCTTCCAATGCAGGGGGGTACGGGTTCAATCCTTGGTCAGGGAACTAAGATCCCACGTGCAGTGCAGTTCAGTCAAAAGATTTTTTTTAAAAAGACGTTGCTCCTAATCTCCAGACCCACCACATCCTGTGGCTCACATCTGGTCGGCCTGAGGCCAGCGTGCAGGGCTTCCTCCCTTCCTGTCTCAG
Seq C2 exon
GTCCCCTACGATGACCTGCGGTACCTCTTCGGTGAGATCATGTACGGGGGCCACATCACCGATGACTGGGACCGGAGACTCTGCAGAACCTACCTGGAGGAGTTCATCAAACCAGAGATGCTACAGGGAGAGCTGGCCCTGGCCCCAGGGTTCCCACTGCCCGGCAACATGGACTACAATGCCTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCTCTTTGCGCTTTGT
R:
TGGTGGTAGGCATTGTAGTCCA
Band lengths:
344-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development