GgaINT0127397 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1189922-1190894:+
Coord C1 exon
chr18:1189922-1190113
Coord A exon
chr18:1190114-1190702
Coord C2 exon
chr18:1190703-1190894
Length
589 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTCCTGCTTCATCCTGCAGGTC
3' ss Score
12.24
Exon sequences
Seq C1 exon
GATACCCTGGAGATGTGCACTCGGGAGAACGAGTTCAAGAGCATCCTGTTTGCCCTCTGCTATTTCCATGCTGTGGTGGCAGAAAGGCGCAAGTTTGGTCCCCAGGGCTGGAACCGATCCTACCCCTTCAACACTGGAGACCTCACTATCTCTGTTAACGTGCTCTATAACTACCTAGAGGCCAGCTCAAAG
Seq A exon
GTGAGTAAATGGATGTGGGCTATTTCATAGAATCACAGCATGGCTTTGGTTGGAAGGGACCTTAAAGCCCACCCAAGTTCCAAGCCCTGCCATGGGCTGGTTGCCACCCACCAGACTGGGGACTAGATCAGCTTGCTGGCTGCTGTTTGGTGGCTTTTTACCTCCAGTAATGAACTGGATCGTGCTGAAACTCCTGCAGATTTTCCATAAGTGTCATTTTCTTGGTGCCTTTGGTTTTATAACATCACAGTTTGTTGTATCTTTGGTGTGAGGCAGGAAACTTCAACAACTTTTGCAGCTTACAGATGATATCAAATAGCGCCTGTGGTCTGTATTCACTGGAAATACATAGTGGTCTTTGGTTTAATAGAATTTAGAATAAATTTGCATTTCAGTGGAAAGCTGCGTAAGTCTGTGCTGCGATGCTGTTTTCCCTGGGCAGGACGTAACTACTGCCTAATGTTTGTTTACTTAGAAAACTGGAACAGTGCAATGGAAGCACTCACTGAGCAGATCAGTCCTAGAGCTGTAGCCTGCAGCTCAGCGATGCTGCCTGAACTCTGTCACAGCCTCCTGCTTCATCCTGCAG
Seq C2 exon
GTCCCATATGATGATTTACGCTACCTCTTTGGTGAGATTATGTACGGAGGTCACATTACGGATGACTGGGACAGACGACTTTGCAAGACCTATTTGGAAGAATTTATTAAGCCAGAAATGCTGGAGGGAGAATTCTTCCTTGCTCCAGGATTCCCTCTCCCAGGGAACATGGACTATAATGGCTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(12.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGAACGAGTTCAAGAGC
R:
AGTCCATGTTCCCTGGGAGAG
Band lengths:
346-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]