MmuINT0051262 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65663378-65664697:-
Coord C1 exon
chr11:65664506-65664697
Coord A exon
chr11:65663570-65664505
Coord C2 exon
chr11:65663378-65663569
Length
936 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CTCTCTCACCTCTGACTCAGGTA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GACACTCTGGAGATGTGTTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGCTACTTTCATGCGGTGGTTGCCGAGAGACGGAAGTTTGGGCCACAGGGCTGGAATCGGTCCTATCCATTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTATATAATTTCCTGGAGGCTAACACAAAG
Seq A exon
GTGAAACACAGGGGTATGGCTGCGAATCATTATGATATGGACTTCCCATACACAAGGGTTCTGTGGTGTGAGGAAGGTCTAAGACCCCACATAGAGGAGATAAGGAAGTTCCAAGCTGAGGACCAGCCTCAGGCTGAGAAGTCCTACTGTGACATCAGAGCCAAGAAGCAAAGCAATCCAAACTGTCAGCCCCATGAGAATTCATCCAGAGACCCATCAGACTGATTATATGTGTGGACACCACAGCAGGGATTTGTGGATTGACAGAAGGAGACCCCATTCTCACCTAATATAAGTTCCCAACCCAACTTGATAAGCAAAGGAGCAGAGCTTTCATTGATATACACATCTCCTCTTGTGGATGTGGTTCTGCCACAGGTGGAGAAAAGGCCAAATTCATACTGTGTTGCCAGCCTCCTCTTTGTCAGACCCATTTCAGGGAAACATCTGCTAAAGAACTTCCACCTAAAGGGCTGCTTGTACTATCAAGGATCTTTTTGTCTGAAACATCAGCAAGGGCACCACAAGGTCAGATGCCACAAGAAGTCCTGCCAATAGCCCTGAGTCCAAGGGAGCCCCACACCATAGCTTCATCCATCCCCTTTGTGGATTGGCTTGTCTCAAATGGCTTCCCTCCCTAACTCTTACTCCACAATCTTCTACACTATACTTTATATACTCTGAACATTCAGAGGGGACAACTGATCCTGTAATTAATGACAAAAAATTTAAAAGGGCTCATGGCCCTCACATCCTCCAACTGATATTCATTGCTTATGTGAAGGACTTCAGAAAAGCCTGATATAACCCAAACATGTTTAATATTTCCAGGTTCTGGGGACACAAAGTTTAAAGGGGTATCACTTTTAATCTCAAGAAGCATCCAGCACCAAAGCCTGTGGGGAGATCATTCTTGCTCTCTCACCTCTGACTCAG
Seq C2 exon
GTACCCTATGACGACTTGCGTTACCTGTTCGGTGAGATCATGTACGGTGGCCATATCACAGATGACTGGGACAGGAGACTCTGCAGAACCTATTTAGAGGAATTCATTCGGCCAGAGATGCTAGAAGGAGAGCTCTCCCTGGCCCCGGGGTTCCCACTCCCAGGAAACATGGACTACAGTGGCTATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:64
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PD(1.1=3.1),PF0302810=Dynein_heavy=PU(14.2=98.5)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGGAGACAGAGTTCAAGA
R:
GTCCATGTTTCCTGGGAGTGG
Band lengths:
347-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: