BtaINT0051312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98872774-98873603:+
Coord C1 exon
chr11:98872774-98873015
Coord A exon
chr11:98873016-98873387
Coord C2 exon
chr11:98873388-98873603
Length
372 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TCTGTTTCTGTCGCCCGCAGGTC
3' ss Score
13.71
Exon sequences
Seq C1 exon
ACCAAGGAATTCATCTTCTCGGAGCTGCTGGCCAACCTGTATTCGTGCGGGGACCAGAACACACTGATGGAGGAGTCGGCCGAACAGGCACAGCGGCGTGACGAGATGCTGCGCATGTACCACGCACTGAAAGAGGCGCTCAGCATCATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCTGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTACCGACCGGACGCAG
Seq A exon
GTATCAGGGCCGGCTCCCACGGCCCCAAAGCCCCCCAGCCCGGGGCCCGCGGGAGGAGGGCCGGGACCGGGCAGTGGCGCGCCCGCGTCACCGGGGCGGCTCCCACCTGGAGCGAGGGGCGGAGCTTAGAGAGGGCGGGGCTTGTCGCGGGGCGGGGCTTGCCGTGGAACGCTGGCTGCCGGGCGGGGTGGAGCAGGGAAGTTGGAGCCTCCGAGCGGGGGCGGGCTTAAACACCCGAGTGAACCCAGGGAAGAGAGGGGCGGGGGCTTGCGCGCATGGGCGTGGCCGGCACCAGCCTGGGGGCGGGGCCTCGGTGTGGGGCAGAGCAGCTCATCTCTCCCCTGCTTGTCCTTCTGTTTCTGTCGCCCGCAG
Seq C2 exon
GTCACCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCTGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGAGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTCGGTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307:ENSBTAT00000032743:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCAGAACACACTGATGG
R:
GAAGGGGTCAGGGGAAGCC
Band lengths:
353-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development