HsaINT0050636 @ hg38
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128250115-128250940:+
Coord C1 exon
chr9:128250115-128250356
Coord A exon
chr9:128250357-128250724
Coord C2 exon
chr9:128250725-128250940
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCGCTCCCTGTCGCCCTCAGGTC
3' ss Score
10.95
Exon sequences
Seq C1 exon
ACCAAGGAGTTCATCTTCTCGGAGCTGCTGGCCAACCTGTACTCGTGTGGGGACCAGAACACGCTGATGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGACGAGATGCTGCGCATGTACCACGCACTGAAGGAGGCGCTCAGCATCATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCCGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTACCGGCCGGACGCAG
Seq A exon
GTACCAGGGCCGGCCCCCACGGCCCCAAAGCCCCCCAGCCCGGGGCCCGCGGGAGGAATGCCGGGACCGGGCAGTGGCGCGCCCGCGTCACCGGGGTGGCTCCCACCTGGAGCGAGGGGCGGAGCTTAGAGAGGGCGGGGCTTGTCGCGGGGCGGGGCTTGCCGTGGAGAGCTGGCTGCAAGGCTGGGTGGAGCTGGGGCGTTGGCGCCGCTGGGGGCGGGGCTTAAGCTCCGGCGACCGCCTTAGGGGTGCGGCAGGGAGGGGCTTGCGTGCATGGGCGTGGCCAGCACTGGGCTGGGGCGGGGCCTCTGGGTGGGCGGAGCTGCTCATCTCGCCTCTCCTTGTTCCTCGCTCCCTGTCGCCCTCAG
Seq C2 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCTTTCGGCCCTCCCCCTCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976:ENST00000372923:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGAACACGCTGATGGAG
R:
GAAAGGGTCAGGGGAAGCCC
Band lengths:
351-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development