GgaINT0123845 @ galGal4
Intron Retention
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5024959-5025824:-
Coord C1 exon
chr17:5025583-5025824
Coord A exon
chr17:5025178-5025582
Coord C2 exon
chr17:5024959-5025177
Length
405 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGTCTCTGTTTGTTTGTCAGGTC
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACGAAGGACTTCATCCATTCGGAGCTGCTAGCAAACCTGTACTCGTGTGGCGACCAGAATACGCTGATGGAGGAATCAGCAGAGCAGGCCCAGCGGCGTGACGAAATGCTGCGCATGTACCATGCCCTGAAAGAGGCCCTCAACATCATCGGGGACATCAACACCAGCACCATCAGCACCCCAATGCCCCCACCGGTGGACGACTCTTGGCTGCAGGTGCAGAGCGTACCGTCTGGACGCAG
Seq A exon
GTACCAGAGGCTCAGGGGGAGAGCCCCGCAGACCTGCCCGATGCCTCTTAGGGCTAGCTGGGGCCTCCCACTGACACAGAGGGGCTTCTCTTCCCCTCTTCTGCCTGTGGATGGAGAGTTGTGGGTATCTGTGTGGGGAGGCTTCTGCGCCTTGAAAGCTGCCTAGGGCTGCTGTGTCTTTACGGAAGATGTGGAAGCAGACTCTTAGATATGATTCTTAGGTTAGATGGGGCCTGAAGTAGCTTTGAAGGCAATCTGAAACCTGACGCAGCTCTCGGAAGCCAAGAGTTGTGCTTGAAGCGATACGGAACTAAAGAAGGAACACTAAAGGCAGCATGTGGTGATAGTGATGGGGAGGAATCCCAGGCCTGTTGTTGCAGTTGAATGTCTCTGTTTGTTTGTCAG
Seq C2 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000007750:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAATACGCTGATGGAGGA
R:
CCAAAGGGATCAGGAGAGGCA
Band lengths:
355-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]