MmuINT0051753 @ mm9
Intron Retention
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32167647-32168445:-
Coord C1 exon
chr2:32168204-32168445
Coord A exon
chr2:32167863-32168203
Coord C2 exon
chr2:32167647-32167862
Length
341 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCTGCTCTTGTCGCCGGTAGATC
3' ss Score
8.33
Exon sequences
Seq C1 exon
ACCAAGGAGTTTATCTTCTCTGAGCTGCTGGCCAACCTGTACTCTTGCGGGGACCAGAACACACTGATGGAAGAATCGGCCGAGCAGGCTCAGCGGCGCGACGAGATGCTGCGCATGTACCACGCACTGAAGGAGGCGCTCAGTATTATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCCGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTACCGGCCGGACGCAG
Seq A exon
GTACCAGGGCCGGCCCCCACGGCCCCAAAGCCCCCCAACCCGGGGCCCGCGGGAGGAGGGCCGGGACCAGGCAGTGGCGCGCCGGGGTCTCGGGGGCTCCCACCTGGAGCGAGGGGAGGAGCTTAGAAGAGGGCGGGGCTTATTGCGGGGCGGGGCTTGCCAAGAGCGCTGGCTGCAGGGTGGGTGGCGCCGCTGGGGATCCGGCTTAGGCTCCCACGCTAAGGCCGCTGTGGGCGGGGCTTGCTGCATGGGCGGGGACAGCCTGGGCTGAGGGCGGGGTCTCTGTTGGGGCGGAGCCGCTCATCTCTGCTCCGCGCTTCTTCTGCTCTTGTCGCCGGTAG
Seq C2 exon
ATCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGATCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-Dnm1:NM_010065:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.965
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGAAGAATCGGCCGAG
R:
GCCAAAGGGGTCAGGGGAAG
Band lengths:
342-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: