BtaINT0051333 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16501400-16506345:+
Coord C1 exon
chr7:16501400-16501451
Coord A exon
chr7:16501452-16506231
Coord C2 exon
chr7:16506232-16506345
Length
4780 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TGGCCCTCCATCCTCCCCAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
CGCCCAGCAGAGGAGCACACAGCTGAATAAGAAGAGAGCCGTCCCCAACCAG
Seq A exon
GTAGCCTACCCTGCTGTGGCCTGCAGCTCCTCCCTTGAGGGCGGGAGGGCACTCAAGGACCACCAAGCCCAGTGATGGCGCCTGGCTCAGAGCCTGTCCCGCCAGAACCCCCCACCCCACCCCACTCCCAGCCTCTCATGTCCACTTAGGTTTTGACAATTTGGGAAATGGATCTTTGAGTGCAGCTCTGGCAGGGTCTGGGGCCAAACTGCTCACATGCAGAAGGCCCTATCTGCCATCCAAGGCCATGGCTAGAACTTGACACTAAGGAGAGAGGCCACCCAGTCCGCCTGGTGTCTGTAGGAAAATTGGGTTCCTGCCCCAGCCCCAGAGACTCGGAGGCTGTGGAAGAGGGCCAGGAGTGGGCAGGGAGGCTGGTTGTGATCAGCAGTTTGGGAGCACCTGGGGGTGCTTTCAGCCTCATATCTGGGGAAACCCAGAACTGTTTGAGGGATTCTCTGCCTTGATGTCATACTCTAACCAGAGGCCTTGTGAAATAAAGGATAGCTTTATATATGCCAGTATTAAGTGGCCTCCCCTTTTTTTCCCCCTGCTTAAGAAAACACATCATCTTTGCAAAAATTTCTGCCAGTGTCCCCTGCCTTCTCCACACTGGGTGGGGGTGGGGGTCGGGGTGCTGCTGTTCATCACGCACGATGACAGAGCCCCCTGGAAAGAAGGGATGTAACCACTGCATGATTTTTTTTGCGCTTGCCGTAAGTAATTCATATGTTGTTGCTTTTTCGTTTCGGGAGATGATAATGAATTAAATATTAACACCATGGATATAATTAATAGCATGTAATTTTTTTTTCTTTTGCTGTTTTCTCTCCCCTTGCTCTTCTCTCTCCTCGTTTTTGTGCTTTTCCTGCTTTTTCTCCATCCCCTCACGTCCCTTACGTCTCTTTTCTTCCGCCTGCTCTTCTTTGATTTACCCACAACCCTAACTTTGCATTTTCAAAGGGGGAGATCTTGGTAAGTACTCACTTAGTGTGGTAGCAAACGTTAGAGAACTTGGTGGTGGTGGAGATGCTGCCATCCTATAATATTCCGCTCCCCTCCCCCGCCAAAAAAATAACAGAACCACTAAAAATCCAGCTAACCTAAAAAAAAAAAAATCCCCTGCCATGGCCACTGCATGCCAGACTGTTGCCCTGGGCGTGAGCTGACTCACACAGACACTAACCTGCCCACTGCCTGCCTCCAGCACCCACCCCTCTAGCCCGTTCTGGACACATTTTCCTCATTTCCTGTAGGTCAGGGATGGCAAATACTCAGCTAACATCCCAGGCCTTCCTCCCATCACACCTCTGGCCAGGGAAAATTTTGTTCAAGCCCTGCTAGAGAGCTTGTCCTTGCCACTGCCACTGCTCTGTTTGCAGACAACACCCTGCAGAAATGTCCCCTGCCTGCACTCAAGGCAGACATTACTAACCGATCCAGCACTCTTTCCCTCCTGTCTCTCCCCCTAATGTGCCCCTGGCAGACATCACTAATCAATCCTGGCTTTTTTTTTTTTTTTTTTGCGAAGCATGTGACAGATATGATGAACTAGTTAAGGAATTTTTTCTTTCCCCATGTGATAGCTTTGCACATGACACCCCTCCCATCCCCATGACAGACATGGCTAATTGGTTGGGGGACTCTCTCCTGGATGCTGCCAATCTCTTCCCGCCTCCATAGCAGATATGATGACTGATTAGGCTGTTCCTCTTGCCCCGTCTCTTTGCTGATGGTAGACATCACTAATTGATCCTAGTATCCTTTCCCCCTGTGCCCAGAGTGCCACCCATGGATTGGTGAATAGTATTTGCTATCCCTGTTTTAGGTATCACCTCCTGTCTGTGTGTGGCCCAGCCCAGACCAGCAGTGAGCAAGCACTGCTCACATCTGAGAGCTGAGCTCTTTTCAAGGTGCCCGCCCTTTGGGGAGCTCTCCACCCTGGAGATCATGGCTTGGGCCAATGGCCCTCACTGAGCCTTCCTTTTCCCGGCTACTCTCCCACCACACTAAGCAGGCCTACAGCCGCCCTGCTGGTGATCCCAGGGCCTTTCAAGTAGCTGAGCTGACCCTGTACCAGGGTCTGGAAGATCCAGAAAGACCCCAAAGCTTGGCATGGTTGGCACGGCCACAGGAGGAATGGATCATCCTTGGACCCTTGGTTCCTGCTTTCCCTGTGTGTCACAACCCCGCCTCCCCAGTCCCCTTTGAACTTGAATGATTTCCTTCCTCCAGACAGACCAGGGCTATGTTTCTCTCCACACCCACACCCTGAGGTTTAGTCATTCTTTTCCCACTAGATTCCACACCCCCAGCCATGAAGCCCAGCTCTGCCCTGTGCATGGCTGTGGCACCTGGATCTCCCAGCCACAATTCTCATCCCTGCCCAGACCTCTCACCCGGGAGGAGATGGGCTCTGCTGCCCCGCTTGCCTGCTGCCCATGCCACCCCTGGCAGCCTTTCCTTCTGCCCCCAGCATGCCTGTGCCCTGGAGCATGGGAAGCCTGCCTGCCTCTCTGTCTCCCCAGCTGACCCTAGTCCTGCCCCCCTCCTTTTCCTGAGCCCAGTCCCTTCAGCACAAATTGCTTGGATGAGAAGGCCTGATTGCCCCTTCTTGCTCTAGACTCAGCACCTATGTCTGCCACCAGCAGCTTGCTCCTCCCCAGGGGGGAGATTTTTGTCTCCGAGTCCTCTTGGGCTCCTGCACAAGCAGTTCTCAGGGTGGCTCAAGGGCAAAGGGACTTGGGGGCGCAGTGCTTCTCCAGACCCCGAGGCTCAGATATGCCATTCCCAACATGGCCACAGCCCTTGCCACATGCCCCAGAGCCAGTCAGGGGCCCCATCTGCCGGCTCTGACCTCAGCTGACCGAGGGTGGAGGCAGGCAAGCCAGGCCACAGAGGGGGAGGGGGAGGGGGAGGGGCCCATCTGCCCTTGTTGGGACAAGGCTGGGCCTGGGAGTGCAAGGGCCTCGCCAGGTGAGGGTATCTCCTCTGGGGATCACCCAGCAAGCATGGCCTCTGCCCCTGTCTCCTCCCCACCTATCAGTCAATGGGTGAAGTTTAGAAGCACCCCCTCTGGGCCTGGGCTAAGACAAGACAGGCCTTACACTCCCCCTGGGGAGAGAGGGTTGTCGTGGACAGACGCCTACGCAGCTCCGGAGCTGGGCGTGGTTGCCAGGTGCAGGGGTTCCTTCCTGGGTCCTATATGGGATGGCCTTGGGCCTGAGTCTGGAGACCTGCTGTCCCACTTTGTCTGGGACTGAGGGCACCCCCGGGACTGTTAGTGCTCAGCCTAGGGGCCTCCTGGGCAAACCACGGTGAGTCAGTCACCTTGTTTGGGCTGACAGTCTCTGCCTGCTCCCTGGCAGCCACAAGACTCCCAAGTGCTGACTCGTGATCCTAGGGAGAGAATAGTCTATATCCTGGGCCTTAGCAGGGGCTGCCAGGTGGTGTCTCATGGGTCACAGCCTAGGCAGGGACATCTCTGCGGTGCAGAGGTCCCTGCGTGCTCTGTGGCCACCTCTGCCTTCATGGTCCCTGAGGCTCGGAGCTCACTTCCAGGTGGCCCTGTGACAATGTGGTGGGCCTGGGGACAGGGCAGAATAGACAGGATGAAGGCCTTCTCGAGATCCATCCGCAGGGGAGGCATGGGAGCCTCACCCCACCCTAGGGGGCACAGTGCTCTCTCTTCCCAGCCAGCCCCAGCCACTCGCAGCCCACCTCCTGCAGCTTAGCCGTCTATTGTTGCCTCGGCCTCAGGCATCCCCACCCACCCCTGCCCATGCTTCCTACTGCCGCAGGGTCCCCAGTCCAGAGTGGTGGGGGGCTCCAGCCCACAAGCGCCTCCATGGCCCAGAGAACATGAGAGTGTGCCCCACACACACACCAGGCTAGCCGCCTGCCTTTAGCTGTCAGGTGAGTCCCTCACACAGGCCTGGGTTCTGCCCCCTGCTCAGATGACAGCTGCAGCCAGAGGGGAGCCCTGTCGGGTTCTTCCAGCCCAGGACCTGCATGTCCCAGTCAAAGAAAAGTGGGACCACATAACTTGAAGCAGAGTGTGGGGCATGATCCCTGGCAGGTCCCCTGGGCTCAAGCCCTCTGGGTGGAGGCATTCCTTCATCCTGGTGTTCTGGAAAGAGCCTGTGGGGAGGGGAGCCCTGGGGCAGGGCCTAGCCTGACTTCCTGGTCAGAGCAGGACTCTGTGCCCACTGAGTGCCTGGGTGAGCCGGGCAGTGGCGACCAGCCTCTGCCAGTTGGCCCCTGAAAGGAGAGAAAGAACGGTTCCGTTGCTCAGCAGTCCCTACAGCTCTCCATCAACGGCTGCCTTCCAGGGGGCGCGAGGGGCAGGGCCCAGGGGGTCCCTAGTACCCGTGTCTCCCCAAGGCAAGGCTGATTCCTTCAGTGTCACATCTACACGTGACATACCCACCCATAAGACTGGGATCCCCCTCCCCTAGGCCCCTTCTAGCTGGGCGTACCTCTTGCCACCTGTGCCAGTTTAATCTAACCCCAAGGGCAGAGGGGCTCCCCAGGGACCCAGCTTCCCAGCAGCCCAGGGCCTGTGAGTCAGTCCACGTCTGTCCATCGAGGGCCCCACCTTGGTTTCCAGTGGGTAGCGCTTGGGGCAAGGCGGAATGGAGTTGGATCGCCTGGCTCTGGGCTGGAGGTTTCTCTGCCGTGGTAGCCTGGTTTTTCTGCCTTGCTGGGGGCGGGGGCAGGCCGGGCTGGGTGGTGGCCGTGGTCCCCCTGCTGAGCTTGGCTGGCCCTCCATCCTCCCCAG
Seq C2 exon
GTGATCCGCAGGGGCTGGCTAACCATCAACAATATCAGCCTGATGAAGGGAGGCTCCAAGGAGTACTGGTTCGTGCTGACGGCCGAGTCACTGTCCTGGTACAAGGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362:ENSBTAT00000036123:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=66.7)
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]