GgaINT0123839 @ galGal3
Intron Retention
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5671273-5672618:-
Coord C1 exon
chr17:5672607-5672618
Coord A exon
chr17:5671387-5672606
Coord C2 exon
chr17:5671273-5671386
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TACTGCTTCCAACCTTGTAGGTC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GATGAGATCCTG
Seq A exon
GTGAGTAGAAGGCCGCTCAGTAGGGTGTGCTAATGAACATCAATGTTGCATCTGGGAAGGTGAGAACAGTGTATAGGAAAATTATTTCCTCTGCTGCTGAAGGGGGAGAGGAGTGCAGCTGGCAGTAGGCCCAGGTGAAGCAGAAACAAGGTATAAAGCTGCAGTGTGCTAAGGAAATTCTTGGAGCTGCAGGTTTATCTGCAAGTGGGTGGAGATGAAAAGCAGCAATCCAGGGATCTGGGGTTCTGTTTCACTGCCCCCTCCTGTCCATTGAGAGAATAGGACTGTCTCCAGTTCTAACAGTGGCAGTGAGGTGAAGATCCAGTACTCTCACATTCACCTTTAGAGATACAGGTTGAAGGATTGTGCAGCTCTGTGGTAGGCTGCTTGCTGATACACAGTGCAGTTGCATGCTTTTTTTTTTTCCACTGCTGGGTCACATTCAACAAGCAACCATTCACTGAGGTACACACACATTGCACGCAGATGTATCTGGGTGTTAAGGGTCCAGCAGGACACAGAAGTTAATGCCTTTAAGCCGATGCATATTTGCATTTGAATATTGGTGTGTAAGGCTCTAAAACAGCAGCTGGTGGAGTTCCTTAGAGAGTAACAGCCTGGCTTCTCTACAGACTAACCTATAGGAAGTTGTATTGCTCTGTTAATAAGTGCTCAAATACATGGGTATGCTGAAGTCCAGAGTACTGATTCCAGATGCACCATTTTGTTCTCACATACTTAATGTCTCCTTGTCACAAAACTCAGTTATATCAGAGTTGCTTGCCCATCTCTTTCTCTTGAACTGTTTCCCCCCACCCCTGAGCTGGGTGAAGCACTCCCCACCTGCAGTGTGCCAACAGGGGTGCTGCTCTCTTGGTTTTTCTCTGGGCATGCTTCTTTTTCTGGGTGTGTTGCTGTGACCTGATGCTTCTGTAGGTTGTGCCTGCTCACAAGGCACTCTATGCAATCCTTCCTGTGTCTCTTGACAGAGTGCATAAGGCGCAGCCAGGTTCCTTCCTGCATCCTTTTTATTCCTAGCCCCTTTGAGGCAAAGGTTTTCACCGGCCAGTTGAGCGGGGGGGCTCTTCTGGCAGCAGCAGAGAGCACGGTGTTCCTTGTCTTTCCATATGATTCTGTGTGTAGGGGTACCCTCTGCTCTTTCCTCTGCCACCTAAAGCTTTTAGGTCCCTTGCTAACGCTTACTGCTTCCAACCTTGTAG
Seq C2 exon
GTCATCCGAAAGGGCTGGCTCACCATCAACAACATTGGGATCATGAAGGGTGGCTCCAAGGAGTACTGGTTTGTCCTGACAGCGGAGAACCTCTCCTGGTATAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000039847:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]