RnoINT0049804 @ rn6
Intron Retention
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11350431-11352645:-
Coord C1 exon
chr3:11352634-11352645
Coord A exon
chr3:11350545-11352633
Coord C2 exon
chr3:11350431-11350544
Length
2089 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTCCTCCTCCCGCTCCAGGTC
3' ss Score
11
Exon sequences
Seq C1 exon
GATGAGATTCTG
Seq A exon
GTGAGTACCAGGCCTGGGTGGGGCGGTTCTTGGCTTGTGCAGTTTCGGGGAGGTGGTGTCTCGCTGGTGATGGGGATCTGCTCGGGGCAGAGGGTACCCTTTGTCTGAGCACCTTGCACGTATATACCAGCACATGAATTCCACACCTGCTCACAGGACAGAGGAAGGCCCCGCCATGCTCACAGTCCCATAACCCATGTATAAGTGTGCACCAGCCAAGCACCTGCTGCAGGCAGAGCTACACCACATGGGGATGGATGGGCCCAGGGCTCAGTTGCTGCTCTTTAAACGTCTGTTGGAGGAATGTTTGGTGACTGTTTGGAGTGGATATGAGACAGGCATGTTCTTAAGAAGCAGGCAGTGACCTCCAATGGAGAGTTAAGACATGATGAACAGTCAGGAGCCTGGCCCCTCCTCTCCAAGCTCCCGGCTCCATACTTCAAATGGCCGTGGAAGCAGCACTTACTAACAGCCCTGGCTCAATCCAGTCATACACACGAGACCCGGAGTCCTCACTATTTTCCAGTAGTTTCCAGAGGATGTGACTGGTTTAATATCTGTTTCCCATCCAGCCTTAGGCTTGGTTATTTCCCATCCCAGCTTCTCGGTCCCAGCACACAGTAGGTTCTCAGAGAAGGAGGACCAAAGGGAATTGTATCTCAGGAAGCTTCAGAGCCTGCCCTGCCCCTGCCCCTGCCCCTTGAAGACCCCGTACCTACAGATAGGGCCCCAGTAGGACCTCTGAGAGTTCCGGGTAGGATGAGAGTCTCCAGTTCAGGTACTCTGACGGGGAGCTAGGTGAGCAGGTGAGAGCACAGGGTTGGGAGTGGCTAAGAGGAGGAAAAAGCTGTAAGTCAGCTGGGAAGCAGACTGTGCCAGTCAGATCCTGGGACAGCAATGGACTGAGGTCCAAAGGCAGGCACTGAGGACATCCCACCAGTGGGGTGGGAGAGGGTTGGCAGGGTGTCTGGTTCTGGGTGCCCTGTTAATTTGTTAATTGACCAAAGTAGTGGCGATCTCCCTCTGTTTGGGTGCTGCTAGATTGTGTGATTTGAATTCCCAGTGAGGTTCTCAGAAGCCTGAGGGAGTCAGGAAAGGCTAGAAGTGAGTTGTGCACCCAGGCCTCCAGAGAAGCATCCAGTAAGGTCAGGACCAGGGAGGGAGCAGGACAAGATGAAGTCCCTCTTCAGTCAGAATCACAGGGGCAGGCCGGGGGGTTTCGCACAATGACCAAGGTCTGTGGGGATGTTTTGGGACAGACCTCTGGAAATGAACTCGTGCTTGTTATTCTGGACTTTCGGCGGGAAGTTCAGACCTGGAGAATGGGTGGCTTGGTTTCTCCCTTCTGCCCCAAAGGCTTTTAGAACTGTAACAGCTCACTGTCCATTTATTCATGTCACCACAAACATTCCTCCATCACTTACTGACTGACCAGCACTCCACAAAGTGATGCCGGGCACAGGGAGACGCATGCATTAGCAGGAAAGGCTGTCAAAGTGGCTAATATCGTTCTTTCTGGAGAGGGAGGGAGTGAGTATTAAAATTGCAGTCTCGGTTACAGAGGCAAACATAAAAGACTAATCAGAGATCATTACCGTGCTTCTGATGGGCACGGAGGATAGGGAGGGCCGCTCGCCCTGTAAATCTGGACAGATACCAGGGGGAGAGTAGATATGTGCCAGGTGAAAAGGGAAGAGGAGCAGCCTCAAGTACAAGCTCCTGAGGTTAGACGTGTGTTAGAGGACACCCTCAAGTGATACTTGGAGTTGCTCTATCTAAACGTCTGCCAAACTCTGCTTGCACACTCTTAGCGACGGGGAGCTCACCCTCCGTTAAGTGGCCAATCCTTGGTTCACACATCTCTCTGGCAGTTAGAAGGCTCTCTATCTTGAGCTGACCTTCGCTTTCCTGTCTTCTACTCTCTTCACTTGTGGTTCAAATCAGGGCAGGCCTGGCCCCCACCCTCTCTGACCAGTCAGGCCTCAGAGAACTTGGAGAAGGGGCTTTTCAAGGCCTCCTTATTCATCCTTTCCTCCATGAGGAAGCCTGGCCCATGCCCACCGACCTTCTCCTCCTCCTCCCGCTCCAG
Seq C2 exon
GTCATTCGAAAGGGGTGGCTGACCATCAACAACATCGGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTTGTGTTGACTGCTGAGAATCTGTCCTGGTACAAGGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835:ENSRNOT00000047921:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]