HsaINT0050630 @ hg19
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:131002007-131004624:+
Coord C1 exon
chr9:131002007-131002062
Coord A exon
chr9:131002063-131004503
Coord C2 exon
chr9:131004504-131004624
Length
2441 bp
Sequences
Splice sites
5' ss Seq
TGAGTGGGG
5' ss Score
-6.23
3' ss Seq
CTGACCTCCTGCCCCATCACCCT
3' ss Score
-2.76
Exon sequences
Seq C1 exon
TGCTCAGCAGAGGAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAGGTGA
Seq A exon
GTGGGGCCCAGCACCCCAGCCCGAGGGATGGAGGGTGCCGGACGGACACCAGACTCTGAGAGCCCCCTCCCCTGAGGGGAAGGGTCCCACGGGGGCCAGGGACCTGTCAGCTGCCAGCCACAAGCCTCCCACTCTGCCTCAGTAACCCTCTCTCCTCTCTCCCCGATGCCTCTCGTGGTTGCTATGGTTACCTCTTTGCAGGATGAGATTCTGGTGAGTACCAGGACTGGGGCTCTCGGCTTGTGTAGTGAGGGGGCGGAGGGTCCATCGGCAGTGGGGATCTGCAACGGGTAGGAGGGCACCCTTTGGCTGAAGCTGCTTGTACACACCAGCCCCTGGCATTTCACACCTGCCCTCAGGCCAGAGGCAGGCCCAGCCGCATCCACCCGTCCATCTGTGTGCACGAGCCAAGCACCTACTTCAGGCAGAGCTAGACCGTGTGGGGCTGGGTGGGTGAGAAGGCTGGGCCTGGCACGGAGTAGGTGCTCCTTAAACATCTGCTGGATGGAGGGATGCACGTGAGCAAGACACATTTTTAAGAAGCTGACAGCCATCGCCTCCGGACTTGAATGAAGAGACGAATGAGAAGTCAAGAGAAGTCAAGAAGTCACTGCTCACCTGGCCTCCTGCTCTCTGTCCTTAGATGTCTGCGGAAACATCCCTCGTCAGAAGCGCTTGCTCAGTTGTACACATGAGCCCGAGGGTCCTCAGCTTTTCTTTCCATAGGTTCCAGAGGCCGTAGTTTCTTTGTAAGACTCTAGGTGTTTATGTGATTATTGGCTTAATGTCTATTTCCTTCCCAGGCCCCATAAGGGGAGGGCTGAGTCTGTCCCGTTTATCATTAAATCCTCAGCTCAAGCCCCTAGCCTGGCACGCAGTAGGTGCTCAACAGAATGAAGGGAGGAATGAATGTAGTATCAGGACAATTCAATTCAGCCAACACTAGCTGGTGCCTACACGGTGCTGGCCCCTGGACAGGACGTGGAGACCTGGGCCTGCTGGTAGGGCCCAGCTAAGGCCCCTGAGAGCTCCATGCAGGGTGGGAGTTGGGAGAGCAGGAGGTCCCTGGTGCAGGGCTGCAGAGAGGGCTTAGGATGAGCAGAGAGGAGTTCAGGGCTGGGTGTGGCCAAGGGGGAGGACAAAGACTACAAGTTAGGGTGGGGAGCAGGTGGCAAGATCTGCTGGTCACATCGTGGGACACAGTGGACTCAATTCCAAAGACAGTGACAAGACCCTGTGGGGATCCTCGCCTGATCAGGAAGGGGTGAGAGAGGCAGCTGGTGTTCTCCCCTCAGCTCAACTGCTGCTGGGCTGTGCAGCTTGGGTTCTCAGCGAGGTTCTCAGGGAACCAGAGAGGCATAAGGAGGGCTCCAGAAGCAAGCCTGGCCCCAGAGGGCTTTGCCGCCAGCCCCAGGCCTCCTTGGGTCTTCTCTGGATGCTCAGAGAAGAAGCTGGGGAGGTCAGCGTCCAGGAGGGAGCAGAAGCAGCTGCCTCATCCTCTCGATCTGACCCATGACCAGTACCTGGCCAGTGACCCTACCCCTGAAGTAGAATCCACAGGCCCTGGACCGTGGCCATGGCTCTGGACAGTCCTGGGGACAGCTGCTTCCTGCCATGAAAAGGGACCTTAGCTTGTTACTCTAGGCACTTTGTGGCTCAGCCCTTGCCCCTGGGGACCTGGAGCCAAAGACCCTTAGAACCGTACTATCATAGCTTTTATTTATTCATACTACAAATATGTATTGATCACTTACTATCTGCCAGGCCCTCTGCAAGGTGCTGGGATGTACTAGTGACCAACAGTTCATGATTTAGCAGGGGAGGCTGCATCGACAGATAATCACACACACGCACGTAGAGAAGTTAATTAAAAATCGAAGCCCTTGTTACAGAAGTCGACTTCAGGGAGTGATCAAAGATCATTATGGGAATCCTGATTTATACTGGGGGACAGGAAGGGGCTGCCTGAGAATGTGAATCCTGAGCTGATACTCAAAGGCTGAGTAGGAATTTGCCAGGCAAAAAGGAAAAAGTGCTTTCTAGGCAGAGGCGGCAGCAGCATGTGTAAAGTCAGAAACACATCTCAGAACAGATGAGACCTTAAGCTTCCAAGACTCGCAGTTGGCTTCCCCAATCGGCCCCATAAACTCTGCTTGCATACTTTTAGTGACAGGGAGCTCATCCCCTACCCAGGCCTCCAGTCCCTTAACTCGGCCAGGTCTGCCTGTCAAAGGCTCTTTATCCTGAGCTGATCTCTGCCTTCCTCTGTCTTCCACTCTGTTCACTTGTGGTTCAAACCAAGGCAGGTCTGGCCCCCACCCTCCCTGACTGCCAGGCCTCAGAGAGCTGGGAGAGGGGTGGGGTTTCGAATGCCTCTCTTTGCCTACCCCATCCCCCATGGGGAGGCTCAGGCCCTGTCCACTGACCTCCTGCCCCATCAC
Seq C2 exon
CCTCCAGGTCATCCGCAAGGGCTGGCTGACTATCAATAATATTGGCATCATGAAAGGGGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-DNM1:NM_004408:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)