HsaINT0050688 @ hg19
Intron Retention
Gene
ENSG00000079805 | DNM2
Description
dynamin 2 [Source:HGNC Symbol;Acc:2974]
Coordinates
chr19:10916592-10923053:+
Coord C1 exon
chr19:10916592-10916643
Coord A exon
chr19:10916644-10922939
Coord C2 exon
chr19:10922940-10923053
Length
6296 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
AGCTGCGCGCTTTCCCCCAGGTG
3' ss Score
9.54
Exon sequences
Seq C1 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG
Seq A exon
GTAGCACACCCCTCTGCAGTCTCCCGCTCTACCCTGGGGGCGGGAGGACGCTAAGTGACAGCTAAGCCCCCGTGATGGAGCTCGGCCTGTGTAAAGCCCCACCCCACAGCCTCAGTACCAGGCCATCTGCTCTCTCTAGAGGCCACTTAGGAATTGATAATTCTGGGAGATGGCCTGAGAGCCAACACTCTGGCAGGGCCTAGTGGGCACATTTTACCCACCCAGAAGGCCCTATGTGCCATCCAAGGCCAGGGTTAGAACTTGACTCTTGGCTGGGCACAGTAGCTCACACCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGAGGATCACTTGAGGCTAAGAGTTTGAGACCAGCCTGGGCAACATAGAAAGACTCTGTCTCTACAAATAATAATATTTAAAAATTACCTGGGAGTGGTGGGCTCATGCCTATCACCCCAGCTACTTAGGAGGCCAAGGTGGGAGGGTCACTTGAGCCCAGCAGTTCATGACCATCCGGGGCAATACAATGAGACCTCATCTTAAAAATTAATAATAGGCTGGGCACGATAGCTCACACCTGTAATTCTAGCATGTTAGGAGGCTGAGGCGGGCGGATTGCCTGAGCTCAGGAGTTTGAGACCAGCCTGGCTAACATGGCAAAAACCCCATCTCTACTAAAAATACAAAAAATTAACCAGGCGTGGTGGCACGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATTGCTTGAACCTTGGAGGCGGAGGTTGCAGTGAGCCAAGATTGCGCCACCGCACTCCAGTGTGGGTGACAGGGCCAGACTCTGTCTCCAAAAATAATAATAATAAAGATATAAATAAGAATTTTTCCCTTGAGCGGGGGTCTGTGACCTCTTTGAGCTTTCCAACACAGCCCCAGGGATTGGGAGCCCCTAGGTGAGAGCCGCTGGAAACTACATTGTCACTAGCAGCTCAGGGGAGCTTGGGATAGTTGAAGCCCCACACCTGGAGAAGCCCTGAGCCACAAAGGGTTGTACCTTGACATCTTAACCCAGCTAGAGGCCTTGTGAAATATGAACGGCTGTATCAATGCCTGCCTTCAGTACCTTATTATTATTATTATTATTTTGACACAGAGTCTCGCATTGTCACCTGGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGGTTCAGCCTCCTCAGTAGCTGGGATTACAGGTGCTCACCACAACACCAGGCTAATTTTTTTTTATTTTTTTCTTGAGATGGAGCCTTGCTCTGTGTCCCAGCTGGAGTGCAGTGGCACGATTTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAGCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCATCTTGGCCAGGCTGGTCTCAAACTCCTGACCTGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGAATTACAAGCGTGAGCCATCACGTCCAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGCCACCAAGGCTGGAGTGCAGTGGCGCGGTCTCAGCTCACCACAACCTCCGCCTCCTAGCTTCGTGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCGACGATTACAGGAGCCTGCCACCACCCCTGACTAATTTCTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCCCAGGTGATCCACCCGCCTCGCCCGGACAAAGTGCTGGGATTATCATGCCAGCCTTTATCATTAATTTTTAAGAAAACCTGGACGGGCACGGTGGCTCACACCTGTAGTCCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAAGAGTTAGAGAACAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCTGGCATGATGGTGGGTGCCTATAATTCCACCTACTCGGGAGGTTGAGACAGGAGAATCACTTGAACCCAGGAGATGGTGGTTGTGGTGAGCCAGGATCACACCACTGCACTCTGGCCTGGGCGGCTGAGCGAGACTCCATATCAGGAAAAAAAAAAAGAAAGAAAGAAAAGGAAACCATAATCTTCGCAAAATTTCTGCCTATGTCCCTCCCTTCTCCCCATTGGGCAGGGGTGGGGGCGGGGACTCCACCATGTACCTTGCACGATCATAGAGCCTACTGGAAGGAAGAACGTAACCATTGCATGATTTATTTTTGCGCTTGCCGTAGGTAATACATATGTTGTTGCTTTTTTGTTTCTTGAGATAATAATGAATTAAATATTAACACCATGAATATGATTAATAGCATGTAATTTTTTTTCTTTTGCTGTTTTTTCCCCTGCTCTTCTCTTCTCCTGTTTTTGTGCTTTTCCTGCTTTTTCTTTGTCCCCTTCACGTCCCTTCCATCTCTTTTCCTTTGCCTGCTCTTCCCTGATTTACCCACAACCCTAACTTTGCATATTCAAAGGGGGAGATCCTGGTAAGTACATGCTTAGTGTGGTAGCAAACATTAGAGAATCTAGTGGTGATGGAGACCCCGCCCACCCCTAATATTCCCTGTTCCCCATCCCCTCCAAATAACAAAAATACTAAAAATCGAGCTAACCTGGAAACCCCATGCCGCAGCCGGCGCTGGACTGCACGTTGCCCTGGGTATAAGTCGACTCACACAGGCACTAACTGGACCGCCACCCTTGAAGGCGCACTTCTGCAGCCAGTTCCTGGCAGGTTTTCCTGGTTTCCTGTAGGTCAGGGATGGCAAATACTTACACACCGCCCCTGCCTCCCCTCACATCCCTGGCTGTGGAAGATCTCGCTTAAGCCAGACCAGAATTCATTCTTGGCACTGCCCCTCCTCCTTCTATCTCCTATGCAGATGTCACTCATGGATCAGAGCATATTTTTCCACATGGCAGAAATCTTGCCCTCTTGTGCCCATGGCAGACATGGCTAGTTGATCTAGCACTCTTTGCCTTGTGCCGCTCCTCTAGCACACGCCCATGGCAGACATTGCTAAGCAATCCTAGCATTCTTTCCAAATAAGCTTGCCAGCACTCCTGTTCTATAGCAGATGTGGCTAAGTGATTAAGGTATTGTTTTTCTCCCTATATGATACCCTCTTCTCTATGCATGGCAGGCATGACTAGTCAATCAGGAGCCTCTTTCCTAGATGCTGCCTCTTGTCCTCCAGATAAATTGATGAGGCTCTTCTGTTCCACTTACCCTTTCTCCTATCCTTGGCCTGTGACAGGCAACACTAATTGATCCTAGCACCGTTTCCTGCCACGCCCAGAATTCTCACCACAGTGCTTCAGGTATCTTGTACCAGTCGATTGACATGGCTCCCGAGATGAATCATATTTGCTGTCCATCCCTGCTGTGGGTAACACCTCCTTCCTTTGTGCAGAACCCTCAGCTGGGGCCCAGTGTGGGGCGTGAGATGGGCGTGAGGCCCAGTCCAGCCCAGCCCAGCGGGAAGCAGCCTGCTACTCATAGCTGAGAACTGAACCCAGCTCAAGGAGCTCACCTCTAGGCAGCCGGCCTCAGCCCGGCTCTTACACTTGGACAGCACAGCCTGGGCCTCCAGTCCTAGCAGGGGCTCCCTTTTGCTGGACATTCTCCCACTGCCAGCCACCAAGGCGCTGGTCATCCCTGCCACTGCCCTCTGGCGGGGCTCTTCTGGCAATCCCAGGGTCTTTCTTGTAGCTGAGCCGATCCTATGCCAGGGCCTCGCTGCTCCCAGGGCCTGGGTGTGCAGATAGGGCCATGGGTGGGGCAGTGACGGGAGGAATTAGTTGGCCTCGGGCTTGTGGTTTTCAGGTTCCTCATGTGTTCCCCCCAGTCCCTTTGAATTTGCCAGGCCAAGACCAGGAACCTGCTTCTCCCTTGTACCCCAAGAGGTTTAGGGGTTCCTCTTTTCCTACCAGAGGCCACATAGCCCAGCCCCGTCATGAGCGTGGCCGTGGCCTCTGGGTCTCCCATCTGTGGTTCCCATCTCTACCCGGGAGACTCAGGCCAGGACCCTCACCCAGGAAAGAGACTGGAGCAGCCTGCCAGAGGATCCCTGCTTTGCCGCCCCCTGCCTGCCCTGCCACCCATACCGCCCCATGTGCCTGCCTGCCTGTCACTGTGCACCCTAGCCCGCAACGGCCTGCCGCCTCTTCTGTCTCTCCCACCCCTACTTCCTTCTAAGCCCAGTCCCATTGGGATGTGTCCCTTGGATGCAAACCTGACTTTCTGCTGAGGCCTGGCTGCTCCCTTTCTCTGGCTCACAAGTGGTGGATGGCTAACGGGCCTTTGTTTGCCACCCACAGCTTGCAGCTCCCTAGGGTGGGATTTTGTCTCTGAACCCGTGTGGAGAAGGGCACCTCAGGGCTTCTGCCAGACGTCCTGCCCCAAGGCTTGGTGTGCCATCCCCAGCATGGCCCCGATCAGTGCCCTGGCCCTGTGGCCATGCACCCCAAAGTGTAGCGTGGGCCCTGTGCTCCAGCTCTGACCAACACTAACCCCGGCTGGAGGCAGGAGAGCCAGGCCACCGAGGGGTGTGCGGGCACATCCCTCTCCTTAGAAACCGGGCCAGGCCTAGGAGTATGGAGGCCTCACATTTCTCTGGGGGAGCACCGACAGCCTGTCTCCCTGTTTTCCCTCACCTGGTTGTCATTCAGTCATGGAACCAGGGTCTACTAAGCACTCGTTCTGTGCCCAGCTCTGGGCTGAGACAAGGCAGTGCCCCCACCCCGCTCCCCCCGGGTGAATGGAGGCATTCCCAGACTGCCAGACCTTTGGTGCTAACACCAGGACGTCCTGGACAGACCAGGAAGAGCTCGTCACTGCGTTCCCAGAGGGGATGCTGTGACCTCACAGGGGCTGCTGGCCTCAGCCCCCTCACCCACCACCAGGCAGCCCGTGAATGGCCAGATGCCAGGGGTCACTGCCTGCTCCAAACAACTGTGAGAGTCCTGTCTGCTCATCCCAGGGAGGGATAAGTCTGTACCCTTGGCCTTAACAAGGGGCGCCCGGTGGCATCTCATGCTGTCCCCAGCCTGGGCAGTGACTTCTGCATGGTCCAGGGGTCCCTGGGTACTCTTTAGCCACCTCCGTCTTCATGGCCACCTGGGGCTTAGCACTCACATCCAGCCACCAAGGAGCCGCTGGAGCTGTGGGCTGGTGGCCCTGGTTCAGAATGTCAGGCCCGGGGTGGGTCGGGGTAGTCCGGATGAAGCCCCTCCAGAGGACCGCCCCCGACTAGGACAGCATCTGGGCCCCAGAGGGATTCCTGGAGGCCCCATCTCTGGCGCTCCTGCCGTGCCGTGCCCTGCCATGCCCTGCACTGGGGGATGCAGGCCAGCCCTTCGCAGCTGTCCATGGCCATGCTCAGCCCACCCTTTGTAGCTTGGCCAAGTCTGTCAGTGCCTGGGTCCCAGGCCGCCCTGTGCGTGCCTCCGTGTGCTTCCTGCAGCTCCCAGGGCCCTCGTCCTGAGTGGGGTGGGGGGCTCTGCCCACACATGCCTCCAGCGGCCAGGGAGCATGGGAGCACAGCCCCCAGGCTGCCTGCCGTTAGTTGTCAGGTGAGTCCCTGCGCAGGCCTGGGTTCTGACCCCCACGCAGATGACAGCTACAGCCACACAATCCCCATCCATGGGGTCTCCCAGCCTGAAACCCTGATGTGTCAGTCAAAAGGATGACCACCAGGCTTGCAGCCAGCTTGGGACATGAGCCGCGCTCCTTCAATGTCCTTGGGGAGGGCCCCTGGGCTCACACCTTTGACCCTAGCCCTCTGTGTGGATGCTACCCTTGGAACCTTATCTCACGCAAACAAGTGCAGTTCCTCAGATGTCACATTTCATGTGCCACAGCCCCACACACAAGCCCCAGGGACTCCTCCCATGGGCCCCTTTCCATCAGGCCTCTGTGAGTCTATACCCCATCAGCCCCTGGCCCAGTGAGTCTGTCTGTCCGCCCACCTGCCCAGGTGGCGCCTCATGTTGGTTTCCTGCTGGAAATGCTTGGGACAGGGTGGAACTGGGTTTCCTGGGCTTTGGGGCTGGAGGTGTCTCTATTGCGGTCCCTGGCTTCCCACTGAGCTGTGGGCAAGGCTGCTGCGCTGGGGGATGGCTGGGGCACGGAGCGAGGTTCCCTGCTAAGCTGCGCGCTTTCCCCCAG
Seq C2 exon
GTGATCCGCAGGGGCTGGCTGACCATCAACAACATCAGCCTGATGAAAGGCGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCCGAGTCACTGTCCTGGTACAAGGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079805-DNM2:NM_004945:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(10.1=66.7)
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)