GgaINT0123838 @ galGal3
Intron Retention
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5672607-5673992:-
Coord C1 exon
chr17:5673941-5673992
Coord A exon
chr17:5672619-5673940
Coord C2 exon
chr17:5672607-5672618
Length
1322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCTATGGTTCCCCTTTGCAGGAT
3' ss Score
9.24
Exon sequences
Seq C1 exon
TGCTCAGCAGAGGAGCAGCCAGATGAGCAAGAAGAAGGCAGCTGGCAACCAG
Seq A exon
GTAGGCCAAGTTTCCATCTCCTTCACTGCTGCAAGAAGGACATGTTTGTTACCTGGGAGCTACCAGGTGGACAAGTGCTGGGTTGGATGCAGCAGTGTTCTAAGCTGTGGCTTTTTGTTTTTATTTTATACTTCCCAAGCTCTGTTTACATCTGGAGGAGAATTTTTAGGCTCAGTACGGTCGTAAAGAGCCAAGTGTGTAGCAGCAACAGAGGGAAAGTGCCTTTGAGGGAAATGGGTGTTTGATAATCAAGATCTAGTCTTGTACAGTCTGAAGGGGTACAGTATGAAGTAAGCTCACTGCCTGCTGTCTGGTCTTGATTTTCTGATAGAAATCCCTATCAGTGTCGTATATCTCCCTGGGTTTTCAGCCCTCCACTAGCTGTGCCAGCTCTTCTGCTGGGGTCAAGGAGTGCAGAATGCTTGGGGTTTTGTAGATGCATTCATGTTTGAGCCACTTAATAACAAGGTGAACTCCCTCTTCCAGTCCAATTAGTGCTAGGTCTGCTACAAGACAGACTTGTGAATCCTAGTTATCTTTCCCATCGGTGGCCATTACTTTCTGCAAAGGTATTTCAGGAGAGTTCATGGTCTCTCTTGTGGAAATACTTCAGCCCTCTGCGCTGGGAGACAGAGGGTGATGTATAGCCATAGCTGCACAGGCTGTGTGAGAACATGCTCGGTGGGAGAAAGCACAAGGGAGGAGTGGAGTCCACTTACTCTTTCAGGAGCTGTAGGGATTGCACATGCAACTGAAAAGGAGCTAATGACACCTTCTCCTAGATTTGCTGGGGAAATGACAAGGCTATCAAGACTAGAAGATGCTGTAGGGATAACATCACAGAGTGGAGGAAAAAAAGCTTTCATTTAATCGTCTTTTAAAAAAACTTCACTCCTAATATCCATTTCCTTTGAACATGTCTGATCACCTTTTCCTGCACACATACATGCAGACTGTTTCAGTGCTGCTGGCAGGCAGGCTGGACTGGCCAACATCTGCTTTGTGGGATCTCAGTGCTGCTGTACCGAGCCTGATGCTCTGCAGTGCACCTTGCTGGAGAGCTGACTGTACCAGAGCATAGAGGGCGAGCTCTGCACCAACCACTCCACCAACCTTGAGCTTTTCCTTTTGGCAGGCTTTGTTTTGGGATGGGGATTGCTTTTCTTTTTGCCTGGGATATAAGTTTTGGCACCAGGTTCCGGTTTATTTTTATTTTTTGAGCCTCTCTTCTCCTGCTCCAGCTTTCCTAGTAATAATTTCTCCTCTCTTTGCTCCTCTCCTGCTCTCTGCTCTGCTGCTGTTGCTATGGTTCCCCTTTGCAG
Seq C2 exon
GATGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000039847:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]