GgaINT0123838 @ galGal4
Intron Retention
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5040008-5041393:-
Coord C1 exon
chr17:5041342-5041393
Coord A exon
chr17:5040020-5041341
Coord C2 exon
chr17:5040008-5040019
Length
1322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCTATGGTTCCCCTTTGCAGGAT
3' ss Score
9.24
Exon sequences
Seq C1 exon
TGCTCAGCAGAGGAGCAGCCAGATGAGCAAGAAGAAGGCAGCTGGCAACCAG
Seq A exon
GTAGGCCAAGTTTCCATCTCCTTCACTGCTGCAAGAAGGACATGTTTGTTACCTGGGAGCTACCAGGTGGACAAGTGCTGGGTTGGATGCAGCAGTGTTCTAAGCTGTGGCTTTTTGTTTTTATTTTATACTTCCCAAGCTCTGTTTACATCTGGAGGAGAATTTTTAGGCTCAGTACGGTCGTAAAGAGCCAAGTGTGTAGCAGCAACAGAGGGAAAGTGCCTTTGAGGGAAATGGGTGTTTGATAATCAAGATCTAGTCTTGTACAGTCTGAAGGGGTACAGTATGAAGTAAGCTCACTGCCTGCTGTCTGGTCTTGATTTTCTGATAGAAATCCCTATCAGTGTCGTATATCTCCCTGGGTTTTCAGCCCTCCACTAGCTGTGCCAGCTCTTCTGCTGGGGTCAAGGAGTGCAGAATGCTTGGGGTTTTGTAGATGCATTCATGTTTGAGCCACTTAATAACAAGGTGAACTCCCTCTTCCAGTCCAATTAGTGCTAGGTCTGCTACAAGACAGACTTGTGAATCCTAGTTATCTTTCCCATCGGTGGCCATTACTTTCTGCAAAGGTATTTCAGGAGAGTTCATGGTCTCTCTTGTGGAAATACTTCAGCCCTCTGCGCTGGGAGACAGAGGGTGATGTATAGCCATAGCTGCACAGGCTGTGTGAGAACATGCTCGGTGGGAGAAAGCACAAGGGAGGAGTGGAGTCCACTTACTCTTTCAGGAGCTGTAGGGATTGCACATGCAACTGAAAAGGAGCTAATGACACCTTCTCCTAGATTTGCTGGGGAAATGACAAGGCTATCAAGACTAGAAGATGCTGTAGGGATAACATCACAGAGTGGAGGAAAAAAAGCTTTCATTTAATCGTCTTTTAAAAAAACTTCACTCCTAATATCCATTTCCTTTGAACATGTCTGATCACCTTTTCCTGCACACATACATGCAGACTGTTTCAGTGCTGCTGGCAGGCAGGCTGGACTGGCCAACATCTGCTTTGTGGGATCTCAGTGCTGCTGTACCGAGCCTGATGCTCTGCAGTGCACCTTGCTGGAGAGCTGACTGTACCAGAGCATAGAGGGCGAGCTCTGCACCAACCACTCCACCAACCTTGAGCTTTTCCTTTTGGCAGGCTTTGTTTTGGGATGGGGATTGCTTTTCTTTTTGCCTGGGATATAAGTTTTGGCACCAGGTTCCGGTTTATTTTTATTTTTTGAGCCTCTCTTCTCCTGCTCCAGCTTTCCTAGTAATAATTTCTCCTCTCTTTGCTCCTCTCCTGCTCTCTGCTCTGCTGCTGTTGCTATGGTTCCCCTTTGCAG
Seq C2 exon
GATGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000007750:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]