DreINT0058787 @ danRer10
Intron Retention
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63019994-63022939:+
Coord C1 exon
chr5:63019994-63020045
Coord A exon
chr5:63020046-63022927
Coord C2 exon
chr5:63022928-63022939
Length
2882 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTATGCCAACGCTCCTCAGGAT
3' ss Score
5.05
Exon sequences
Seq C1 exon
CGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAG
Seq A exon
GTAAGAACAATGGCACAATGAGCAGACGCATCACAAAGCGCTCGGACAGATGTTTGCTGCTTCGCTCAAGCATAATATTTGTGAGAACATCAGCAGCAGGTTTATAATTGGACGCCACATCACTCACTGCCTGTCATGTGAGATTTTAATTACTGAGAACAGGGCTGGGGGTTGTTTTGTAAAATATTTGTGGAAGGTTAGAAATAATGAGGAGTTTCTTTTGTTTCACTGGCAAACACAAAGAGCAACTGGATTGTGACAATAGTTTTTTTCCCATAATTTATTTAAAAGCGTCTACACTGAACATGCAATCGGGTCTAATAATTACTTTTTACTACGGTACACTTGCAGAATTTGAAGTAAGAAATAATGTATGATGTGAACAAAGAAATGCATGGTGAAGTGAATGCTCAGCTAAAGTAAATCTCAGCTTTTTAAAAAATAATCCAATAAAATAGTGTATTTAAATATAGTAACACACACGCTCACAAATATAGTCATTTTAGATTATATTGATGCTGTGGCAATGTACATAAATATATACCAACCAAACAAATAAGTAAATAAACACAAATCAATAAATAAATTAATAAATAAATAAATAAATTAATTAATTAATGAACACAAACAAATAAACACAAATAAATAAATAAATAAATAAATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACAAATAAATAAATAAACACAAATAAATAAATAATAAATAAACAAATACATAAACAAACAAATAAATAAACAAATAAACATGAACAAATAAATAAATAAACGCAAATAAATAAATAAATACAAACACATAAATATATAAACACAAATAAATAAGCAAATAAACACAAATAAATAAATAAAAGTCTTAATAATAATTTGCCAATGTACAATTATTTTAACATATGTAATAGCAATTTTACTATCAGTTAAGCTACACAAATGAATATATACAATGGTCCCTAGCCATAACGCGATTCACCTTTTGCCAAACTTACATAAATCTTCAATCGCTAGCAGTGTGACTCTGAAGTGCAGTACTGTTTGTTTGCAAGTTTTCTCTTCACAATGTCCACGAAACATTATTAAATATAATATTTAGGTGTATTTTATCTTAAGAGTTTTTTTCTATTTAAAATGAGAAAAAAAAGTAAGATATTTAGTAAAAGTAAGATACTTAATTTTTGTTTTACAATGTACACTCAAAAAGGAGTTTTGCTGCCTTTGTCATTTAAAATGAGCTGAATCAACACAATTCTTGAGTTTTTTGGCAAAAAACTTAATTGTTTTTTTGTCAATCCACTTAAATTTATAAAAAATTAGTTAACCTAATCAATTTGTGTTGGGATAACATATATGTATAACATATATATACAGTTGAAGTCAGAATTATTAGCCCCCCTGAATTATTAGCTCCCCTGTTTATTTTTTTCACCAATTTCTGTTTAATGGAGGGAAGATTGTTTTAGCACATTTCTAAGCATAATAGTTTTAAAAACTTATTTCTAATAACGGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATAAGTTGAACTAGACAGGTTACGGTAATTAGGCAAGTTATTGTATAACGATGGTTTGTTCTGCAGACTATCGAAAAAAAATATAGCTTAAAGGGACTAATAATTTTGTCCCAAAAATGGTTATTAAAAAATTTAAAATTTCTTTTATTCTAGCTTAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACATACTGTGAAGATTTCCTTGCTCTGTTAAAAATCATTTAGGAAATATTTAAAAAAATTAAATAAAATCAAAAGGGGGCTAATAATTCTGACTTCAACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACAGTTAAAGTCAGAATTATAAGCCCCCCTAAATTATTAGCCCCCTGTTTATTTTTTCCGCAATTTCTGTTTAGCGGAGAGCAGATTTTTTTCAACACATTTCTTATCATAATAGTTTTAATAACTCATTTCTAATTACTGATTTATTTTATCGTTGCCATGATGACAGTAAATAATATTTACTTGATATTTTTCAAGACATTTCTATAAAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTAAACTAGGCAGGTTAGGGTAATTAGGCGAGTTATTGTATAATGATGTTTTGTTTTGTAGACTATCGAAAAAATATATAGGTTAAAGGAGCAAATAATTTTGACCTTAAAATGGCTTTTAAAATAATGTAAACTTCTTTTATTCTAGCCGAAATGAAACAAATAAGACTTTCTCGGGAAGAAAAAATATTATCAGACATACTGTGAAAATGTCCTTGCTCTGTTCATCATTTGGGAAATAAAAAATTCTAAGTTGGGCTATTAATTCTGACTTCAACTGTGTGTGTATATATATATATATATATATAAGAAATTATTAGTTTAAACAATAATTTGATATGTATTCGCTAATAATATACAGGCTTTATATGATAATGTAAAATAAAAATAGAAGAGCACTTTTAGCATGTTATATTTAGGCACATTTCACAAATGATTTTATGTCTTGGTTTCATGCTGTGAACTGAACTATCTTCACATCTTTCTGCTATGCTTGTATTCTGTTCATTTTGTCTGTTTTCTCCGCTGCCTTTTTCAGTTTCTAATTACCTGTCTTTGCTTTGCTACTGTTCCTATGCCAACGCTCCTCAG
Seq C2 exon
GATGAGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281:ENSDART00000134261:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]