BtaINT0052072 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018579 | DOK1
Description
Bos taurus docking protein 1, 62kDa (downstream of tyrosine kinase 1) (DOK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024543]
Coordinates
chr11:10069708-10070210:-
Coord C1 exon
chr11:10070117-10070210
Coord A exon
chr11:10069893-10070116
Coord C2 exon
chr11:10069708-10069892
Length
224 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TAATTGTATAATCCTTCCAGGAT
3' ss Score
5.89
Exon sequences
Seq C1 exon
AAAGGCAGCTGGGCCCTGGCACCTGCCGAGAACCCACCCAAGCTTTCCGCCCTGGAGATGCTGGAGAACTCGCTGTATAGCCCCTCCTGGGAAG
Seq A exon
GTAGATGGCCTGAAAAGCCCCAGCAGGGATGGGGTGGAAAGAAAGGGTGTCCTAGGAGGGGAAGTAGGAAGCTCCTAAGAGCTGGCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTTTACAATCTGCTCCCTTCCCCCACCCTAGTCCTGGCCGGGTCCCAGTCTAATTGTATAATCCTTCCAG
Seq C2 exon
GATCCCAGTTCTGGGTAACGGTGCAGAAGACTGAGGCCGCCGAGCGCTGTGGCCTGCATGGCTCCTATGTGCTGAGAGTGGAGGCAGAGAGGCTGACTCTTCTGGCCCCGGGGGCCCAGAGGCAGATATTGGAGCCACTTCTTTTCTGGCCCTACACTCTGTTGCGTCGCTATGGCCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018579:ENSBTAT00000024728:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.1)
A:
NA
C2:
PF0217412=IRS=FE(58.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCCGAGAACCCAC
R:
CTTGTCACGGCCATAGCGAC
Band lengths:
260-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development