DreINT0059461 @ danRer10
Intron Retention
Gene
ENSDARG00000099177 | dok1b
Description
docking protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2063]
Coordinates
chr7:58935593-58938427:+
Coord C1 exon
chr7:58935593-58935683
Coord A exon
chr7:58935684-58938254
Coord C2 exon
chr7:58938255-58938427
Length
2571 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GAATCTGTTCTGTTTTGCAGTTA
3' ss Score
8.25
Exon sequences
Seq C1 exon
GGAGGAAGTGGTTCACTTGGTAGTTCTGACTCAAATGGACAGCAGGAGCTTCAAATGGCAGAAAATCTCATTTATTACTCCAGGGAAGAAG
Seq A exon
GTAAGAAGCAACAGCGTGGCACAGTATGAATTTACAATACTCTGCTATAAACCATGTGAGCTAGCATTTAGTTTTTCGATTTTTTTTTTCTATTTCAGCTAAACAGCTGTGTATTTACATAATGTGCAAAGAGTTTCTAAAAAAATATACACATGACATCGTCTCCACTGTTAATTTGTCAAAGACTTTTTGTTGCTACATGTAAGTTAAAGTGTCGTCTACACCACCAAAACTGCTCTGAGATCAGAGGCATATTCTGTTTCATGCAAATGAGCGGCATGCAAATTTCCTTCTGACGTTAGTTGCTAAGCCTGGAATATTAGAGCTTTTGAACGTGTTGGTCATGTTACACTCATTTCATTTAAACTGTGAAAGATGGAAAGAGCTAATTAGACAGAAGGCAAAGCCGAATATCAGGCATGCCCCACCCCTTTCATGACTGGCAGTTTTTATGCAAGGTAAACAGTCAAGGAGTAACTTTTAAGTCCAGTCAGTTCACATACTGACTCTTGCTCCTGCCATGATTCTCCAGTGTTTCTAGGGAAATAGTTTGTGATCACTTCTGTTTTTACTATGGGCAGAACTGACTTCCTCAAAGAGTGTAAGAAGTGACATTTAAAAGGTTTGAAACGGTACAGTCTTGGCACGCTGACTCAACTGTATCTTTTATTTAGGTTTTTGCTCAAGTATGAATGTGGGCTTCAGATTTTAGTTGAAAGCCAATCTAGAGATACTCAAGACAATGAACATCGATTAGGGGAATGCATTTTATGTATGTTATCAGTTTGCAGGGAACATTTAGAAAGTAGGTCAAGCATCACTTGTGGCCTGCTTTCTTTGATAAGCAAAATCATGTCTGTGGTGAACTTAGTAGAGAAATAGCACATACAAAACTGAAATGATAAACATCATTGTTGTATTTTTTTATACTGTATTATTCGTTTGTCCTATGTGATTTTTAAAAAGTACAGTGTTGGTCAATTTCCTGAAATTTTAAAAAAAGCACTTTCAGTTTTAGTCAGATGCTGCAGAACTTATTCTCATAGTCTTGTCAATACACAGAATCATTATAAATTGTACAATTTTAATGTTGATTTAAAGGAATACTGGATGACAAAATAATGTAAAAAAATGTATAGCTACTATAATTGTATCAAAAGCTCATTGTCTGCAAAGAGTATTGAATATTGTATGTAAACTTTACTATTAAAACTTTAACTCTGAACTGTTACTGTGTATTAACTTTAACATCACGATAATATACCTTTTTAGCATAATGTGATCATTCACAATAGGCACATCACGAGTATACACAATGTTGAGCTTGGATTATAATTTAGTATTTCGTAAGTGTTTTTGAGGCCTGTGACTGAGGATTTTAAAAGCAATCAGGCATAAGAAGTTTTACCGTTTGAAACTTTGACAATAATATGTGTGTGTGCTTGCTGCTTCATGTGTACACATGTCAGAGCTTGAAGGTAAACAAACAATGGTTTATCATAAGCATTTTATCGATAATTATTTACACAGTTGGTCTTAAGAAGGAACATAGAAACGTTATCTGACAAACATCTAGTGGCTAAATGTGTCTGGAAAAATATTCAAAGGCTTTTATTGTCATAAACCGTGCAGATGTAAAAGCATCTGAGTGTTCTGATTGGCTAAAGTAGACGTCTCATGTCAGCGCATTCTAGACATGAACGCGCTCTTTCTGGCAAACTTCCGTCTGCGTTCACACAGCGCAGCATTCCAGCAAATTCCGGAAAAAAAAAAACAACTTCTCTTACCGGAAAATTGCCGGAACAAATTTACCAGAATTTTTGAAAAGGGCCTGTTCACACATACAGACCTTTCCAGAGAGTTGCCGTTAATTTTTCTGAACGGTCTGTATGTGTGAAAGGGGCTTATGGGTATGTATAAAGAGTGTACAATATACAATATATAAAAGTACATTTGACATAGATTTTTGTCATTGCTCCATGTAGAAAATACATGACCAATGCTGGCTAGATTACCAAGTTATTGTAGTCCATTTGAAATGACAGAACTTGTTTATTCCGTAGGTTTTAACATGTTAGCAGTGTAACTGCAAAGTATATTTGAATCAAAATGAAAAACTTGAACAAAGTTGATTCAATATTTGACTTGTTTAACAGTCTAATGAGACCACCAGCATTCACTGTTCTTAAACATTCACTGTCCTCAGTGAACTGTGCAAATATGCCGTTAAATGACCTACAAATTTACTTTTTACAAACTAAGTTCTATAAACAGCCATTCATAAAGATGAAAGAGACATTTTATAGCTCTCAGGGTTTTTAAAACATTTTCCGCAAGCATTTTTAGAATCTATAAATAGTGAATGCCACAAGACCTAATGAACACATATTATTTTACCATAAATTAACTTTAAATCTTAAATTTTTCCAGAAAACATGTCATCATTTACAACCCAGTACTGTATCGCACTTGCGATTAAATCTGAACTAAATCTGAAAAAAAAAAAAAAAATAAATATATATATAATCATATTAACACACACTCCTAACTTGAATCTGTTCTGTTTTGCAG
Seq C2 exon
TTAATGAATTTTTGGTGACTGTTCAAAGGACTGAAGCATCAGAGCGCTGTGGTCTGTCTGGTAACTACTGGCTCAGGGCTAACATGGACAACCTTATCTTGAAGGATCCCAAGACTAAAAAGGATTTACTTATATGGCCCTACAAGCTTCTCCGTCGCTATGGAAGAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099177:ENSDART00000172046:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.2)
A:
NA
C2:
PF0217412=IRS=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]