RnoINT0050507 @ rn6
Intron Retention
Gene
ENSRNOG00000007412 | Dok1
Description
docking protein 1 [Source:RGD Symbol;Acc:1309499]
Coordinates
chr4:113865466-113865860:-
Coord C1 exon
chr4:113865767-113865860
Coord A exon
chr4:113865651-113865766
Coord C2 exon
chr4:113865466-113865650
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
CTCTTCCTGTGTTCTTCCAGGAT
3' ss Score
12.42
Exon sequences
Seq C1 exon
AAAGGCGGCTGGGCTTTGGCTCAGACGGAGAACCCACCTAAGTTTTCTGCCCTGGAGATGCTGGAGAATTCGCTGTACAGCCCCACCTGGGAAG
Seq A exon
GTATTAGTCTGGCAGAAATGGAGTGGGGTGAAGAGGTGCCCTTGGGGAGATAGTGATTGGAGTCTACCAAGTCCCCAACCTGCCCCGGCGCTCCTTCTCTTCCTGTGTTCTTCCAG
Seq C2 exon
GATCCCAATTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACGTACTGAGGGTAGAAGCTGAGAAGCTGACCCTTCTGACTTTGGGTGCACAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGACGCTATGGCCGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007412:ENSRNOT00000010020:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.1)
A:
NA
C2:
PF0217412=IRS=FE(58.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGAGAACCCACCTAAGT
R:
CATAGCGTCGCAACAGAGTGT
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]