BtaINT0052075 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003341 | DOK2
Description
Bos taurus docking protein 2, 56kDa (DOK2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102002]
Coordinates
chr8:69727890-69729317:-
Coord C1 exon
chr8:69729163-69729317
Coord A exon
chr8:69728172-69729162
Coord C2 exon
chr8:69727890-69728171
Length
991 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATCTCTCCATCTGGGGCCAGAAA
3' ss Score
4.01
Exon sequences
Seq C1 exon
GAGAGAAGGGGGAACCTAGGGCAGAGAGGAGCGAGAGCGGGTGGGTGTGGAAGGGGAGAGCTGGCGCTCAGGGGCCCCGGGATGCTGCGAGGATGGAGGACGTGGTGGTGAAGCAGGGCTTCCTGTACCTCCAGCAGCAGCAGACTTTTGGGAAG
Seq A exon
GTAAGAAGAGCACCGTTGGTCTGGGGCTGGGCTGAGAGGTGGTGGAAGGTGGGGTGCTAGCGACTCCCCGGAGAGGAGAGGAGGCCCTGGAATGTTCCAAAACCCTTATGGGGTGATGGAGACTGCCATCTACCACACTGGGTGCAGAACACAAGCTTGGGAGGGCTCGTTCCTTAGCAGCCACTTGCTCCCTTGAGCAGCCTCCACATCATGGCCTTTGCTGACAGCCGTGACCCCAGGAGGAGGGGATACCAGAGGACTCTGACTCTTTCTTGTTCTGTGGCGACTTCTCCTCACTGGGACACATTGGGAAGGACTGGACTGCACAGTGGAGGGGATAATTCGGGGTGGCCGTGGAGGTTCCTTCCTCCTTTCCTGCCCAGTGGGGTGCGTTTGGCTGCTTTTGAACTTGAGTCGGGTTCTCTGGGAGCCAGGGCCCCATTGTGTCTAAACTCCTTTTCATTCTTTTGGCCTCTTTGAATAGGGAAGTCCTCCTTCCTTCAGGGGACCCACCCCAGGGTTCCTCTCTCTCTCTCTCTCTCTGTCCCTCTCATGGCCTCAGGCCACGAGTCAGGAAGGTTCAGGAGCGTCAGCAAGTTCCTGGGGACAGGGCCTTCTGTGGGGCCTCATGCAGAAAGAGGAGCTCCCCAGTCTGGGCTCTCAGGCTGCCCTCCTTGCCTCCTCTGGGCTTCAGGACTCACATGCTTTCTGCCTCTCACCTGGGATTCCCTGCGTTGAGCTTACCCAGTCTCCCTGCAGTTGTCATCATGGGGCTCACCCCTGTGCCTTTTCTTTTTTCTTGCCTCTGGCTTCCTCCCTGCTGTCACTGGAGGCCTCTTTCTGGGTCACTTGGGGTGCATCTTCAACGCATACTAACTCTTAAGGCCTGTGTTAAGCCCTCTGCCTCCTTGGGTCTCCTGTGATCTTCCCCTACATCTCCCCCTGGGGTCCTCCTCTCCCCGCTGGTCACCATCTCTCCATCTGGGGCCAG
Seq C2 exon
AAATGGCGCCGGTTCGGGGCTGCACTGTATGGAGGTTCAGGCTGTGCACTGGCCCGGTTGGAGCTCCAGGAGGGCTCCGAGAAGTCGCGCCGGGGAGAGGCCCCCCGGAGAGTGATCCGCCTCAATGACTGCCTGCGGGTGTCCGAAGCCAGCGGGGAGGCCAGCAGTCCCCGAGACACCAGCACCTTCTTCCTGGAGACCACGGAACGCCTGTACCTGCTGGCAGCCCCCACCGCTGAGCGTGGCGACTGGATACAGGCCATCTGCCTCCTGGCCTTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003341:ENSBTAT00000004337:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=76.2)
A:
NA
C2:
PF0016924=PH=PD(83.5=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTAGGGCAGAGAGGAG
R:
TCCGTGGTCTCCAGGAAGAAG
Band lengths:
351-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]