RnoINT0050509 @ rn6
Intron Retention
Gene
ENSRNOG00000013922 | Dok2
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52451161-52452635:+
Coord C1 exon
chr15:52451161-52451380
Coord A exon
chr15:52451381-52452353
Coord C2 exon
chr15:52452354-52452635
Length
973 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTTGCCATACTTGGGCTCAGAAG
3' ss Score
2.52
Exon sequences
Seq C1 exon
ACCACAGGGCCTATCACCCTGTCGTCATCAAGCAGACTAGAATAGAGTAGAAAAACTCTAGGCAGAGAGGAAATGAACTAGAGAGAAGGGGGAACAGGCCCAGAAGAGAGAGGAGAGAGGGCAGAAGCAATGGCGGGCTGAGGCTGGGATGGTCAGGATGGGGGAGATGGCCGTGAAGCAAGGCCTCCTGCATCTCCAGCAGCAGCAGACCTTTGGCAAG
Seq A exon
GTAAGAGTAAGGCTGGGCTCTGGCTGGGTGGAGCCGCTTGGAGGAGGACCTGGTTACTATCTTGGGTAGAGGGGTCTTAATGTCCCTGACCCTTATGAGATCGTGTGCTCTACCAGTTTAGACGTCTTAGGGAAGACATCTCCCTTCTTGCCTTGCCTCCTAACCCAGGCCCCAAATCGCTCTCTTTGCTGAGGGTTGTTTGTCCTTGAGTGTGGGGTGGGGAAGGAAGCAGATGCTGACATCATCTCTCTCTCCCCCTCTCCCTCTCTCTCTCTTTGTTCTCTTGCACAGTATTGAATTCGGGGGTAACTTGGGAGGGTATGGACGGAGGAGTTGGGGACCAGTTTGAGATGACAGCAGAAGTTTCTTACACCTTTGACTGCTACTAAGCTGTGGCCTCAGGGTGTTCTGACCTCTTCCTTCCCTAGCCTCTTTGAAGGAGAAGCTCCTCTGCCTCCTGCTGTCGCCCAGTTGTGCCTACCCACACTCCCTACCTCACCCTGTCTAGGTCTCTGTCTGTCTCTCTGCTTGTCTCTCACGGTCCAATTTGTTAATCAGTGAGACAAAAAGGAAAGAAGTTGGGAATCTTTGGAGCCAGAGCCTTCCCTGTGATGAAGACTTGTTCCTGGTCTAGGCTACCATTCACCCTCTGGGCTCGGTGACTTTTGTCCCCACTACCTGGTGGATGGGCCTGTCATCTTCCTGGGCTCTGCATCCATAGGACATTTACTGCGGCCCTTGCCTAGCGGCAGTTCTTGGTCTCTTGACTAATCATCAGCTCGCTCATTCCATGGTCTCTGTTGTCTTCTCTGGCCTCTCTGGTTCATCTGTGATGGTTCCCTTTCTTCCCATCCTGTGTTGTTGCTGTTCCTGCTCTGCTACCTCTCCTATAACTCCTCTTCTTCCCTTTCATGACTGTCTCTCCATCTCCGATTTTTTCCACTTGGCCTCTACTTGCCATACTTGGGCTCAG
Seq C2 exon
AAGTGGCGCCGGTTCACAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGGCCCGGAGAAGACACGTCGAGGAGAGGCCACTCGGAAGGTTGTTCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGTCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGTCTGTACCTGCTGGCAGCCCCCTCAACAGAGCGCAGTGATTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922:ENSRNOT00000018725:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=66.7)
A:
NA
C2:
PF0016924=PH=PD(83.5=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCGTCATCAAGCAGAC
R:
GCCTACCTCTGCTACCCGTAA
Band lengths:
357-1330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]