MmuINT0052585 @ mm9
Intron Retention
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:71174188-71175554:+
Coord C1 exon
chr14:71174188-71174316
Coord A exon
chr14:71174317-71175272
Coord C2 exon
chr14:71175273-71175554
Length
956 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CGTGGCATACCTGGGCTCAGAAG
3' ss Score
1.48
Exon sequences
Seq C1 exon
GCCCAGAAGAGAGAAGAGAGAGGGCAGAGGCAATGGCAGTGGGGAGCTGAAGCTGCGATGGTCAGGATGGAGGAGCCAGCTGTGAAGCAGGGCTTCCTGCATCTTCAGCAGCAGCAGACCTTTGGCAAG
Seq A exon
GTAAGAGTAAGGCTGGGCTCTCGCTGGGCGGAGCAGCTTGGGGGAGGGCCCTGTTACTATCCCGGGTAGAAGGGTGTCTTAATATCCCTGACCCTTATGAGACCATGTGCTCCACCAGTTTAGACAAGAACACTACTTGGGGAAGATGTCTGCCTTCTCAACGTGCCTTGCCTTCTAAACCAGGCTCTGGATCGCTCTTTGCTGAGGGCTGTTTGTCCTTGCTTGTGGGGGAGGAAGCAGATTCTGACATTATCTCTCTCTCTTTTTGTTCCCTTGCTCAGTATTGAATTTGGGGGTACCTTGGGCGGGTACGGAAGGAAGAGTTGGGGGCCAGTCAGTTTGGGATGACAGCAGAGGTCCCTCTCACCTTTGACTGCTACTGAGCTGTGGCCCCAGGGTGTTCCAACCTCTTCCTTCCCTAGCCTCTTTGAAGGGGAAGCTCTTCTGCCTCCTGCTGTTACCCAGCTGTGCTTACCCCAACACCCACCTCACCCTGTCTAGGTCTCTGTTTCTTTGTTTGTCTCTCATGGTCCAACTCCTTAATCAGTGAGACAAAAAAGGAGAGGAGGTGGGAAATTTTGGAGCCAGAACCTTCCTATGAAATGAAGACTTGTCCCTGGTCTAGGCTACTCTCCCCTCACTGTTCATCTCTGGGCTCAGTGACTTTTGTTCCCACTACCTGGCTGATGGGCCTGTCATCTTCCTGGACTCTGCATCCATTGGACATTTACTGTGGCCTTTGGCTAGCCTGCGGATCTTGGTCAGCTCTGTCATTCCATGGTCTCTGTTGTCTTCTCGGGCCTCTCTGACTGGCTGTGATGTTTGCCATTCTCCCCATCCTGTGTGGCTGCCCCAGCCCCTCTACCTCTCCCACAGTTCCTCTTCTCCCCTTTCATGACCATCTCTCCATCTCCGATGGTTCCCACTTGGCCTCTACGTGGCATACCTGGGCTCAG
Seq C2 exon
AAGTGGCGCCGGTTCGCAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGTCCCCGAGAAGACACGGCGAGGAGAGGCCACTCGGAAGGTTGTCCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGCCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGCCTGTACCTACTGGCAGCCCCCTCGGCAGAGCGCAGTGACTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-Dok2:NM_010071:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=66.7)
A:
NA
C2:
PF0016924=PH=PD(83.5=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGCGATGGTCAGGATG
R:
GCAGATGGCCTGTATCCAGTC
Band lengths:
348-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: