GgaINT0135848 @ galGal3
Intron Retention
Description
NA
Coordinates
chr22:1370928-1372499:+
Coord C1 exon
chr22:1370928-1370948
Coord A exon
chr22:1370949-1372338
Coord C2 exon
chr22:1372339-1372499
Length
1390 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTGCTTCATGCCACGTCAGAAA
3' ss Score
0.69
Exon sequences
Seq C1 exon
CTGCAGCAGACCTTCGGCAAG
Seq A exon
GTGAGGGTGCAGCATGGGGGGCTTCCTGCTAGGGCTTTGGGGGGGCTGCAGGGGGGCTGCATGCGATGACAGTGGGATGTGCAGCACCTTGAGCATCCTTGGGCTGAAGGATTCAGTGCTGGGATGTGACATGAGGAGATGCGGTGCAACCGGAGCCCCTCTGCAGCTGAGGCTTGGGGTGGGATGGGGTGAGGCACAAAGTGATGCAACCCCCATGCACCATTGCTTCAGAGCACGCTGCGGTTCAGTGGCGGTGGCTGCTGCTGTTGTGCAAGGAGGAATGAGAGCGTCGTTCCCCATGCTGGGTGGGGAGGATGAGCGCCCAGCGGGACGTGGGGGGCTGCAAAGCAAATGGGGTGGGTTTGGAGCTTGGCCCTAGCAAATGGTGCAGCAATTCGGCTGCTGGGCCTCCCAGGTTCCCCTTGCAGCCCTGCAGGAGGTGAGTTCTGGTGCAAAACTTCCTCTGGGGCTGCACACCCCCCATGCAAAATGCAGTGAGCTTCTCTGCCTGCTTAGGAGGGCGTGAGTCAGGGATTGCTCTGAAGTCGATGGTTTTAGGAACAGGGGAGTCAATGGGGAGCTGGAAGCACTTTGGGGAGCATGGATTGGAGGGGGATACCATGGGTGGGGGGATGGAATGAGAAGAGGGGTGCAACGGGCAGGGGAATGCCACGGGTAAGGGAATGCCATGGGTAAGGGAGTGCCATGGGTAAGGGAATGCCATGGGTAAGGGGTTTCCATGGGCAGGGGGATGCCATAGGTTAGAGGATGTCATGGATAAGGGATTTCCCTGGGCAGGGGGATGCCATAGGTTAGAAGATGTCATGGATAAGGGATTTCCCTGGGCAGGGGGATGCCGTAGGTTAGGGGATGCCATGCATAAGGGGTTTCCATGGGCAGGGGGATGCCATAGGTTAGGAGACTCCATGCATAGGGGTTTCCATGGGCAGGGGGATGCCATAGATTAGAGGATGCCATGGGTAAGGGGTTTCCATGGGCAGGGGGGTGCCATAGGTTATGGGATGCCATGCATAAGGGGTTTCCATGGGCAGGGGGATGCCATAGGTTATGGGATGCCATGGTAAGGGGTTTCCATGGGCAGGGGGGTGCTTTCCCCACAACCCACCCAGGCTGGGTGATGCTGAGCAGCCTTCAGTTCCCCTTTGCAGCACGGGGACACACGTCTCCCTTACGCTCTGCTTGGGGTTGCAGACGTTTCCCCCGCGCCTCCCAGTCCCCCAGGGGCCACGTGGGCGTTTTGGGGTTGAGACCTTGCCCGGATCACGGAGCGTTTTGCACCAGTAGCGCATCCTAGAAAGTCGAAAGCGGCACCGCTAAGCCTGCGCCCCCCCCTTTCCCCCCCTCCTTTTGCTGCTTCATGCCACGTCAG
Seq C2 exon
AAATGGAAGAAGTATTGGGGCGTTCTGTACCGGGAATCCTCCTGCTCCACCGCCCGCCTGGAGCTCTTCGAAAGCGCCGACAAACCGCGGAAGGGCGAGAGCAGCCGACGCCTGGTGAGGCTGAGCGACTGCGTGCACGTGGCCGAGGTGGGTGGGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024224:ENSGALT00000040909:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]